Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1958 ATGACAATGGAAGAAGTTTCTTTGCCAGGAACACTCCCTTTTGATAGAGCTCTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTCAAGTGTGGTGGCAGAGGAAAGCCCAAACTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATATGGTGCTCGGGGCAGCAGGAAAAGCATTTGCGATTAAGCGGAGTAACCAAAATTGTTCAAGGAGAGGGAAATATAAGGTCTCAGAGACAAAACGAAACCGAAAAGGAGTGCCATTCATTTTCACTGATCTATGCTAATGGTGAACACTCTCTTGATCTGATATGCAAAGACAAAGCACAAGCTGCTACTTGGTTTGTTGGATTGAAAGCTGTGATTTCTAGGTGCCAGCAACCAAAAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGAGTGCAGAGTTGTGTTAGTAGTCCCTCTGGAATTTTACGGCGAAAGAAAAATCTTGGTCTTCTAGATGACACCTCTCAATTTACTCAGGTACATAGCGTGTGTGCAAGTCCTACTTTGTCACTTTCAGAACGGTGTTTTTCTGACGGCTTGTCATATAAATCTGAATTTTATTCATCAGTGTCGTCCCTCTCCAGCATTCATGGCATGACAGACAATTCAGTCCCAAGTTCTCCATATATTAATCCAGATATTCATAGCAATATCAAAACATCTCGTTTCGAAAAAGAGTACAAGAAGGAATTGTCATCAAATAGATCTATCATGCCTCCTGCCTCTGCACTAGTAGGAAACAATGTATTGAAGGATGTCATGGTATGGGGTGGGGGAATTGGTTGCCTTGTTGGGATTGTGAATGAAAGGTTTGTCCAAAATAGTATTTATTCTTTAGTTCCAAAGTTACTAGAATCCACCGCCATGTTAGATGTACAAAATGTAGCTTTAGGAGGAAACCATGCTGCAATAGTTACGAAACAAGGGGAAGTTTACTGCTGGGGTCAAGGGAAGTGCGGAAGGTTAGGGCAAAGAATTGATATGGATATTAGCTCCCCGAAAATAGTTGATACTCTTAGTGATATTCGTGTAAAAAACGTTGCTTGTGGCGAGTATCATACATGTGCTTTGACGGATTCTGGCGAAGTATATGCGTGGGGGAACGACGTTTCTTGTTCAGATTTGGTTGATGAAGGGAGAATTAGAAGTCAGTGGTTAACACATAAACTTTCTTTACCAGTAGAAGGTATTAGTATTTCCAGTATTGCTTGTGGCGAATGGCATACTGCAATTGTCTCTAGTTGCGGTCGGTTATTTACGTATGGAGATGGTACATTTGGAGTACTTGGACATGGGAGTTATCATAGCTTTTCTAGTCCAAAAGAAGTTGAGTCTCTTAAGGGTCTATGTGTGAGGTCTGTTGCTTGTGGAACATGGCATACGGCAGCAATTATTGAAATCTCCGCCGAACGCTTTAAGTACAATACTTCGACTGGTAAGCTGTTTACATGGGGTGATGCAGATGAAGGGAGGCTTGGTCATGCTGATAATGTAAACAAGCTTGTACCGACATGTGTTTCACAGCTTGTTGACTATGATTTTGTTCAAGTATCTTGTGGAAGAATGATGACTTTAGCACTTACTAACATGGGAAAAGTTTTTGCAATGGGAAGTGCAAAATATGGACAATTGGGAAATCCACATGTTAAGGACAGAGCAGTTGTGGTTGAAGGAATGCTTAAACAAGAATATGTTAAAATGATATCTTGCGGTTCATATCACGTTGCTGTTTTGACATCTTCAGGGAGTGTCTACACGTGGGGTAAAGGTGAAAATGGAGAACTAGGGCTAGGCGATACCGAAAACCGATACACACCTTGTTTTGTTGAGGCTTTAAGAGATAGGCAGGTAGATACAATAACATGTGGTCCAAGTTTCACAGTTGCAATATGTTTGCACAAACCTATTTCAATTAGTGACCAATCAAGTTGTAATGGTTGTAGGTTACCGTTTGGCTTCACAAGGAAGAAACATAACTGTTATAATTGTGGTCTTTTGTTTTGCCGCAGTTGTAGTAGCAAAAAAGTTATGAATGCGTCTCTAGCCCCGGTTAAGAGCAAGGCCTTTCGCGTTTGTGATTCTTGCTTCAATAGAAAGCAAGGAAGTAGTGAACATCCAGCTATGGACTCATCAAAGTCTAGAAATTATAACAATCAGCAGATACAAAGGCATCATCAGAACATGACTGGTGATGTCACTGAAGATAGAGGCGAAACAAATGTGACAAATGGTCCTATGTTGTCTCTTAGTCAAACGTGTTACCGGAAAAACATGCCTAGTGGAAGGAAGGTTTGGAAAAGCCAGCAGGATTTAGAAGATAGTTCTTCTAAGTTAGGTAATGTGATACAATGTGGACAAGGACAAGTTCCATATTCAGCACAATTTAGAATCAATTGTACAGAAAATTCAGTTGTGCATGAGACAGAAACAACAAAATCTGATAAGTTGCTCATGGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAAGAGACTTGAAAAGCAATGTGAGCTCAAAAACCAAGAAATACAAGAGTGTCAACAAAAAGTCGAGGAGAGTTGGTCTGTTGCCAAAGACGAAGCTGCTAAGTGCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCACACGATCTCAGGAAAAGATAATCATGGCCTAGAACAAAAGGCTGGGCTACAAGAACTTCTTCCAAATTTGGCACCTATACATACTGATACAAACAGTCCAAGAAATGCCAACATGGACAGTCTATCAAATTCCCCTATAATATTCTCTAGTGCATTAAAATCCAAATTCGGGAGAAGTATTCTTCTTAAAAAGGACAATAATCTCACTAAAGCAGAATCTCAACAAGAGAATGCATTGAAGGTTGAATGGGTTGAACAATATGAGAATGGTGTTTACATTACATTGACAAAGTCGCCGAGTGGAGAAAAAGGCCTTAAGCGTGTGCGATTTAGCCGGAAGCGATTTTCGCAGAAAGAAGCTGAAAGATGGTGGGAAGAGAATCAAACAAAAGTGCATCATAAATATGAAATTGAAACTAGGTGA 3099 0.4017 MTMEEVSLPGTLPFDRALEQAIVSIKKGAYLLKCGGRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGEGNIRSQRQNETEKECHSFSLIYANGEHSLDLICKDKAQAATWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPSGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGLSYKSEFYSSVSSLSSIHGMTDNSVPSSPYINPDIHSNIKTSRFEKEYKKELSSNRSIMPPASALVGNNVLKDVMVWGGGIGCLVGIVNERFVQNSIYSLVPKLLESTAMLDVQNVALGGNHAAIVTKQGEVYCWGQGKCGRLGQRIDMDISSPKIVDTLSDIRVKNVACGEYHTCALTDSGEVYAWGNDVSCSDLVDEGRIRSQWLTHKLSLPVEGISISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGSYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEISAERFKYNTSTGKLFTWGDADEGRLGHADNVNKLVPTCVSQLVDYDFVQVSCGRMMTLALTNMGKVFAMGSAKYGQLGNPHVKDRAVVVEGMLKQEYVKMISCGSYHVAVLTSSGSVYTWGKGENGELGLGDTENRYTPCFVEALRDRQVDTITCGPSFTVAICLHKPISISDQSSCNGCRLPFGFTRKKHNCYNCGLLFCRSCSSKKVMNASLAPVKSKAFRVCDSCFNRKQGSSEHPAMDSSKSRNYNNQQIQRHHQNMTGDVTEDRGETNVTNGPMLSLSQTCYRKNMPSGRKVWKSQQDLEDSSSKLGNVIQCGQGQVPYSAQFRINCTENSVVHETETTKSDKLLMEEVQRLRAEAKRLEKQCELKNQEIQECQQKVEESWSVAKDEAAKCKAAKEVIKALALRLHTISGKDNHGLEQKAGLQELLPNLAPIHTDTNSPRNANMDSLSNSPIIFSSALKSKFGRSILLKKDNNLTKAESQQENALKVEWVEQYENGVYITLTKSPSGEKGLKRVRFSRKRFSQKEAERWWEENQTKVHHKYEIETR* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1958 1032 Gene3D - 17 134 IPR011993 -
Mtr3g1958 1032 Pfam Transcription factor regulating root and shoot growth via Pin3 973 1027 IPR013591 -
Mtr3g1958 1032 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Mtr3g1958 1032 SUPERFAMILY PH domain-like 18 127 - -
Mtr3g1958 1032 SMART fyve_4 646 715 IPR000306 GO:0046872
Mtr3g1958 1032 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Mtr3g1958 1032 CDD FYVE_like_SF 657 710 - -
Mtr3g1958 1032 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 17 1027 - -
Mtr3g1958 1032 Pfam Regulator of chromosome condensation (RCC1) repeat 309 334 - -
Mtr3g1958 1032 Pfam Regulator of chromosome condensation (RCC1) repeat 358 383 - -
Mtr3g1958 1032 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Mtr3g1958 1032 SUPERFAMILY FYVE/PHD zinc finger 653 719 IPR011011 -
Mtr3g1958 1032 ProSiteProfiles BRX domain profile. 973 1028 IPR013591 -
Mtr3g1958 1032 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Mtr3g1958 1032 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Mtr3g1958 1032 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Mtr3g1958 1032 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Mtr3g1958 1032 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Mtr3g1958 1032 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Mtr3g1958 1032 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Mtr3g1958 1032 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Mtr3g1958 1032 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Mtr3g1958 1032 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Mtr3g1958 1032 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Mtr3g1958 1032 Pfam Regulator of chromosome condensation (RCC1) repeat 595 644 IPR000408 -
Mtr3g1958 1032 Pfam Regulator of chromosome condensation (RCC1) repeat 493 541 IPR000408 -
Mtr3g1958 1032 Pfam Regulator of chromosome condensation (RCC1) repeat 545 592 IPR000408 -
Mtr3g1958 1032 Pfam Pleckstrin homology domain 19 125 IPR001849 -
Mtr3g1958 1032 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
Mtr3g1958 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 724 IPR013083 -
Mtr3g1958 1032 Gene3D - 241 390 IPR009091 -
Mtr3g1958 1032 Gene3D - 481 653 IPR009091 -
Mtr3g1958 1032 Gene3D - 391 480 IPR009091 -
Mtr3g1958 1032 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Mtr3g1958 1032 SUPERFAMILY RCC1/BLIP-II 265 648 IPR009091 -
Mtr3g1958 1032 PANTHER F12P19.9 PROTEIN 17 1027 - -
Mtr3g1958 1032 CDD PH_PLC_plant-like 16 128 - -
Mtr3g1958 1032 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 322 IPR000408 -
Mtr3g1958 1032 Coils Coil 828 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1958 Mtr-Chr3 32595969 32602112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1958 974 1030 Major Intrinsic Protein MIP AT1G31880 45.614 4.03e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1958 - - gmx:100794953 1589.7