Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1957 ATGTCTCAACCTTTTGTGTTAATCTCTATTTACATTATTACCATGCAACTAACTATTCTATTTTCACCATCCACTTCTCATTACTCTTCTCCATCACCACCAGCCACACCATTCAATGAATCTCCCCCTACATCTCCCTCTTCCACTTACTCCGAATGGCTGTCCGCCCACGCCACTTACTACTCCGTCTCTGATGACACCAGAGACGGAGTAGACGGGGCGTGCGGCTACGGTGACACTCACAGAGACGGTTATGGCATCACCGGTGCTGCTGCTCTCAGTGAGACTCTCTTTGTGCGTGGTCAGATCTGTGGCGGGTGCTTTGAGCTACGATGTCTGGAAGAGGATGTTCCGTTTGATAAGCGGTGGTGTGTTTCGGGTAGTTCTGTTGTTGTTACTGCTACGAGTTTTTGTGCTCCTAATTATGGGTTTGATGCTGAGAGTGACGGTGGATATTGTAATCCTCCTAAGCAGCATTTTGTGCTTCCGGTTGAAGCTTTTGAGAAGATTGCTATTTGGAAAGGAGGTAACATGCCCGTGCATTATCGCAGGATAAAGTGCATAAGAGAAGGGGGAATGAGGTTTACAATTACAGGCTCTGGCATCTTCAATTCAGTACTGATCAGTAACGTAGCTGGCATAGGAGACATTGTTGGTGTTAAAGTTAAGGGTTCAAGAACTGGTTGGATTCCTATGGGTCGGAATTGGGGCCAAATCTGGCATGTAAATGCGTTACTACAAAACCAACCTCTTTCATTTGAGGTCACTAGTAGTGATGGTGTGACTATAACATCTTACAATGTAGCTCCTAAGAATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTCAAGTCTTAG 861 0.4541 MSQPFVLISIYIITMQLTILFSPSTSHYSSPSPPATPFNESPPTSPSSTYSEWLSAHATYYSVSDDTRDGVDGACGYGDTHRDGYGITGAAALSETLFVRGQICGGCFELRCLEEDVPFDKRWCVSGSSVVVTATSFCAPNYGFDAESDGGYCNPPKQHFVLPVEAFEKIAIWKGGNMPVHYRRIKCIREGGMRFTITGSGIFNSVLISNVAGIGDIVGVKVKGSRTGWIPMGRNWGQIWHVNALLQNQPLSFEVTSSDGVTITSYNVAPKNWTFGQTFEGKQFKS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1957 286 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Mtr3g1957 286 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Mtr3g1957 286 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Mtr3g1957 286 PRINTS Expansin/Lol pI family signature 175 191 IPR007118 GO:0005576
Mtr3g1957 286 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Mtr3g1957 286 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576
Mtr3g1957 286 Gene3D - 39 187 IPR036908 -
Mtr3g1957 286 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Mtr3g1957 286 PRINTS Expansin signature 150 167 IPR002963 GO:0009664
Mtr3g1957 286 PRINTS Expansin signature 167 180 IPR002963 GO:0009664
Mtr3g1957 286 PRINTS Expansin signature 191 203 IPR002963 GO:0009664
Mtr3g1957 286 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Mtr3g1957 286 PRINTS Expansin signature 238 259 IPR002963 GO:0009664
Mtr3g1957 286 PRINTS Expansin signature 267 283 IPR002963 GO:0009664
Mtr3g1957 286 PANTHER EXPANSIN-A13 21 285 - -
Mtr3g1957 286 PANTHER EXPANSIN-A15 21 285 IPR002963 GO:0009664
Mtr3g1957 286 SMART dpbb_1 90 182 IPR007112 -
Mtr3g1957 286 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 192 IPR007112 -
Mtr3g1957 286 SUPERFAMILY PHL pollen allergen 189 281 IPR036749 -
Mtr3g1957 286 SUPERFAMILY Barwin-like endoglucanases 50 210 IPR036908 -
Mtr3g1957 286 Gene3D - 193 284 IPR036749 -
Mtr3g1957 286 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 202 281 IPR007117 -
Mtr3g1957 286 Pfam Expansin C-terminal domain 193 270 IPR007117 -
Mtr3g1957 286 MobiDBLite consensus disorder prediction 31 50 - -
Mtr3g1957 286 Pfam Lytic transglycolase 91 182 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1957 Mtr-Chr3 32575115 32577375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1957 52 286 Expansin Gene Family AT3G03220 68.085 5.54e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1957 - - mtr:MTR_3g064510 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1957 3 32575115 32577375 Mtr5g2611 5 34125149 34128212 PCT