Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1956 ATGACGAATCAAGAGCAAGATGGATTAACTTGTTCCAGTGTTAGCCCTGCAGTAGGAAATGTAGCTGGATCACATCCTGTTACTCATATTCAACTCAGCGATCAGTTATCTTGCGCGAATGATTATGCTCTTAAGGCAAGGAAACCATATACTATATCAAAACAGAGAGAAAGATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCCTTAAAGCTGTATGGCCGGGCCTGGCGAAGCATTGAAGAACATGTCGGTTCAAAGACTGCGATCCAGATTCGAAGTCATGCTCAGAAGTTTTTCTCTAAGATTCTTCGCGACACGAGTGCAAGCATTACAAACACCAAGGAATCGATTGAAATTCCTCCTCCTAGACCAAAACGTAAGCCTATGCACCCTTATCCTCGCAAGCTAGTTGAGACGGTCGGTACTAAAGAAATTTCAATCCTGAAAAAGGCAATAAATTCTAATTCTCTGAAGACATCAGATTTTGATCAAGCAAACCAATCTCCCAAATCAGTTTTATCTACACTTGGTTCCGAAAGCCTTGGTTCATCCGATTCAGATACACCAAACGGAAGTTTATCTCCGATATCATCGATTAGTTGTGTCCGAGCAAGTGTTTTCAGGCCTGCTGAATTCAAAACACCGTCAGAGGAAGAAGCTAGGCTAGATGCTGATTCAGCTCCTGATGAGAAACCTCTTCTGAAACTCGAGATTCTCTCTGATGAAAGTGTTTCTGCAAAAGAAAGCATAGCAGAAGAATCGTCTCGTCCAACTCTTAAACTTTTTGGGACGACTCTAATTGTAAAAGATTTCTGCAAACCATCTTCTCCAACAATTGAGGCATGCAAACCAATACCTCATGACATACATGTTAGAAAGGGAGAAGGAAAATTGGAACTTCTTGGCAAAAGTACACTATGTGAAACATCAGCCATATCTCAGTTAAGAGTAAGAGTGAGGCGTGAAACTTGTGGGAAAGGGTTTGTGCCATATAAAAGGTGCATGTCGAAAAATGAAAACCAGTCTTCATCTGCAACAGCTGATGAAAGATAA 1059 0.4108 MTNQEQDGLTCSSVSPAVGNVAGSHPVTHIQLSDQLSCANDYALKARKPYTISKQRERWTDEEHKKFLEALKLYGRAWRSIEEHVGSKTAIQIRSHAQKFFSKILRDTSASITNTKESIEIPPPRPKRKPMHPYPRKLVETVGTKEISILKKAINSNSLKTSDFDQANQSPKSVLSTLGSESLGSSDSDTPNGSLSPISSISCVRASVFRPAEFKTPSEEEARLDADSAPDEKPLLKLEILSDESVSAKESIAEESSRPTLKLFGTTLIVKDFCKPSSPTIEACKPIPHDIHVRKGEGKLELLGKSTLCETSAISQLRVRVRRETCGKGFVPYKRCMSKNENQSSSATADER* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1956 352 PANTHER PROTEIN REVEILLE 7-RELATED 26 285 - -
Mtr3g1956 352 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Mtr3g1956 352 PANTHER SWI/SNF COMPLEX-RELATED 26 285 - -
Mtr3g1956 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Mtr3g1956 352 MobiDBLite consensus disorder prediction 161 196 - -
Mtr3g1956 352 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 54 103 IPR006447 GO:0003677
Mtr3g1956 352 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Mtr3g1956 352 SMART sant 55 103 IPR001005 -
Mtr3g1956 352 Gene3D - 58 104 - -
Mtr3g1956 352 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Mtr3g1956 352 CDD SANT 58 101 IPR001005 -
Mtr3g1956 352 ProSiteProfiles SANT domain profile. 54 105 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1956 Mtr-Chr3 32568692 32573469 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr3g1956 Myb_DNA-binding 4.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1956 - - gmx:780539 415.231