LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g1934	ATGCGACCAAAACACAACCTCCTTACCTTAACAATCACCTTGTTGTGTTCATGGAGCTTAACAAAAGCTGACCCTCAAACAAGTTTAATCAACAAAGGTTGTAGCCAATACAACGCAACAAACTTATCCAATTTCTACCAAAATCTAAACGCAACTTTGTTAGACTTGAAATCACAAGTACGAAATGATAGCAAGCATTTTGCTACGGCACAATCAGCTAGAGGAGCAAATCCTGTTTATGCTTTGTTTCAGTGTAGGAATTATCTCTCTAATTCTGATTGTGCTGCTTGCCTCGCCGTCGCCGACGCACAAATTCGGAATTGCTCCGCTGGTTCCAACGGTGCCCGTGTTATCTATGATGGTTGCTTCCTTAGGTATGAGAGCAATGGGTTCTTCGACCAAACAACTCAACCTGGAAACAGTATGATATGTGGAAGCCAGGCAGCAAATGGAGCCACTGCTTTTAATGCAGCTGCACAACAAGTGTTAGAGGATCTACAAACTGCAACACCAAAAATTCCTGGTTTCTTTGCAGCTACCAAAACACAAGTTGTTGGAACTGGAAATGCAATCTATGCTATTGCACAATGTGCTGAAACAGTCACTCAAAGTGGCTGTTTAGATTGCCTGACAGTTGGATTTACCAACATACAGAGCTGTTTTCCTAATACTGATGGTAGGGCATTTGATGCTGGTTGTTTTATGAGATACTCAGAGAAATCCTTCTTTGCTGATAACCAGACCATTGATATTGCACCCTTCTTAAAACAAGGAGGTTCAAGTAAGAAAAGGGCCATTATTGGTGGTGTTGTTGGAGGTGTGGCCCTTGTTGTGATCCTCCTTGCACTTTTTGCTTGGTTTAGGCTCAAAAAGAAACCCAAGAAACTTCCTAGAGGTGACATATTGGGAGCAACCGAGTTGAAAGGTCCTGTTACTTACAGGTATAAAGATTTGAAGTCTGCAACAAAAAATTTTAACGATGAAAATAAACTAGGAGAAGGCGGTTTTGGAGATGTATACAAGGGCACTCTGAAAAATGGTAAAGTAGTTGCTGTCAAGAAACTGATTCTAGGCAGCTCCGGCAAGATGGATGAACAATTTGAAAGTGAGGTGAAGCTCATAAGTAATGTTCATCATAGGAATCTAGTTCGGCTTCTCGGATGTTGCAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAGCAGTCTTGACAGATTCTTATTTGGTGAAAATAAGGGTTCCCTCAATTGGATTCAAAGGTATGATATAATTTTAGGCACAGCAAGAGGTCTATCCTATCTGCATGAAGATTTCCACGTTTGCATCATACATAGGGATATAAAGACTAACAATATCCTCTTAGATGATGATCTTCAGCCTAGAATTGCTGATTTTGGATTGGCAAGACTTCTACCAGAAGATCAATCTCATGTTAGCACAAAATTTGCAGGAACATTGGGATACACTGCACCAGAATATGCAATTCATGGTCAGTTATCAGTGAAGGCTGATACCTACAGTTTTGGTGTTGTAGTCCTAGAAATCATAAGTGGCCAAAAGAGTGGCGAGTTGAGGGATGATGTTGATGGTGAATTCCTCCTTCAAAGGGCATGGAAACTATATGAGGAAGGTAGACACTTGGAGTTAGTCGACAAGACATTGAACCCTGGTGACTATGATGCAGAAGAAGTGAAGAAAGTTATCGAGATTGCTTTGCTTTGCACTCAAGCAACAGCGGCTACAAGGCCAACTATGTCAGAAATAGTAGTTCTACTCAAAAGCAAGAACTTCATGGAGCATATGAAACCAACCATGCCTGTCTTTGTTAACTCTAACTTGAGGCCTCGGACCGATACCTCTACATCTACTGCTTCCTCTACATCTAATGCTACTGCTGCCACTTCTATATTATCAGCTAGATGA	1935	0.4109	MRPKHNLLTLTITLLCSWSLTKADPQTSLINKGCSQYNATNLSNFYQNLNATLLDLKSQVRNDSKHFATAQSARGANPVYALFQCRNYLSNSDCAACLAVADAQIRNCSAGSNGARVIYDGCFLRYESNGFFDQTTQPGNSMICGSQAANGATAFNAAAQQVLEDLQTATPKIPGFFAATKTQVVGTGNAIYAIAQCAETVTQSGCLDCLTVGFTNIQSCFPNTDGRAFDAGCFMRYSEKSFFADNQTIDIAPFLKQGGSSKKRAIIGGVVGGVALVVILLALFAWFRLKKKPKKLPRGDILGATELKGPVTYRYKDLKSATKNFNDENKLGEGGFGDVYKGTLKNGKVVAVKKLILGSSGKMDEQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGENKGSLNWIQRYDIILGTARGLSYLHEDFHVCIIHRDIKTNNILLDDDLQPRIADFGLARLLPEDQSHVSTKFAGTLGYTAPEYAIHGQLSVKADTYSFGVVVLEIISGQKSGELRDDVDGEFLLQRAWKLYEEGRHLELVDKTLNPGDYDAEEVKKVIEIALLCTQATAATRPTMSEIVVLLKSKNFMEHMKPTMPVFVNSNLRPRTDTSTSTASSTSNATAATSILSAR*	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g1934	644	MobiDBLite	consensus disorder prediction	614	644	-	-
	Mtr3g1934	644	SMART	serkin_6	325	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr3g1934	644	MobiDBLite	consensus disorder prediction	613	644	-	-
	Mtr3g1934	644	Pfam	Protein tyrosine and serine/threonine kinase	328	595	IPR001245	GO:0004672\|GO:0006468
	Mtr3g1934	644	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	446	458	IPR008271	GO:0004672\|GO:0006468
	Mtr3g1934	644	ProSiteProfiles	Gnk2-homologous domain profile.	137	242	IPR002902	-
	Mtr3g1934	644	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	22	641	-	-
	Mtr3g1934	644	SUPERFAMILY	Protein kinase-like (PK-like)	309	625	IPR011009	-
	Mtr3g1934	644	Gene3D	-	26	131	IPR038408	-
	Mtr3g1934	644	Gene3D	-	140	242	IPR038408	-
	Mtr3g1934	644	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	22	641	-	-
	Mtr3g1934	644	CDD	STKc_IRAK	331	597	-	-
	Mtr3g1934	644	ProSitePatterns	Protein kinases ATP-binding region signature.	331	354	IPR017441	GO:0005524
	Mtr3g1934	644	Gene3D	Transferase(Phosphotransferase) domain 1	402	611	-	-
	Mtr3g1934	644	Pfam	Salt stress response/antifungal	148	239	IPR002902	-
	Mtr3g1934	644	Pfam	Salt stress response/antifungal	34	128	IPR002902	-
	Mtr3g1934	644	ProSiteProfiles	Protein kinase domain profile.	325	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr3g1934	644	Gene3D	Phosphorylase Kinase; domain 1	298	401	-	-
	Mtr3g1934	644	ProSiteProfiles	Gnk2-homologous domain profile.	27	131	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g1934	Mtr-Chr3	32321028	32327973	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g1934	7	644	Receptor kinase-like Gene Family	AT1G70520	35.913	5.61e-127	387

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Mtr3g1934		PK_Tyr_Ser-Thr	2.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g1934	-		-	gmx:100813585	998.423