Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1932 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGAGGAGGGGAGAAGAAATGTCTGAATTCTGAGCTATGGCATGCATGTGCGGGGCCCTTAGTGTCCCTACCAACCGCAGGAACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTGTCTGCTACAACTAACCGAGAGATCGATGGGCAAATACCAAATTACCCTAGTTTGCCACCTCAGTTGGTTTGCCAGCTTCATAATGTCACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACACTACAGCCGTTGACTCCGGAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCGAACTATTTTTGCAAGACTTTGACAGCCAGTGACACCAGCACACATGGAGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGCATATTTGTTAGTGCTAAGAGACTTGTAGCTGGAGATTCCGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGAGCCAATCGACCGCAAACTGTAATGCCATCATCTGTTCTATCCAGTGACAGTATGCACATTGGACTTCTTGCAGCCGCTGCTCATGCTTCAGCAACTAATAGCTGTTTTACTGTCTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCCGTGTACCATACACGTATTTCTGTTGGTATGCGCTTCAGGATGCTCTTTGAGACTGAAGAGTCAAGTGTCCGCAGGTACATGGGCACAATAACAGGCATAAGTGATCTGGATGCTGTTCGGTGGCAGAATTCTCATTGGCGCTCTGTCAAGGTTGGATGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTGTCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCGTCATTGTTTCCCCTCAGATTGAAACGTCCATGGCATCCTGGCACTTCATCTTTGCTTGATGGTAGAGACGAAGCAACAAATGCTCTGATGTGGATGAGAGGTGGACCTGCAGACCAAGGTCTCAATTCCCTAAACTTTCAAGGTGCTGGTATGTTGCCCTGGATGCAGCAGAGACTCGATCCAACTTTACTCGGGAATGATCAGAATCAACAATACCAAGCCATGTTGGCAGCAGCTGGAATGCAGAACATGGGTGGTGGATATCTCATGAGGCCACAAATGGTGAATTTTCAACAACAGCCTACCCATTACCTTCAATCAGGAAACAATAATTCACCTTTGCAACTTCACCAGCCACAGTCAATTCAACAATCGGTGTCCTCTAATATGATGCAGCCACAACAAACCCAAATACTTACAGAAAACCTGTCTCAGCACCTTCTTCAGAAACCAAATAATAATCAAGAACTCCAAGCTCAACAACAGCAACATGCATATCAAGATACACTTCTTGTTCAAAATGATCAGCTCCATCAGAGACAACAACAATCCAATGTGCCGTCACCGTCATATTCAAAACCAGATTTCCTGGATTCAAACATTAAGTTTCCTGCTTCAGTTCCCTCGGGACAAAACATGCTCGGTTCGCTTTGCCCTGAAGGAACTGGCAATCTCTTGAATCTATCGAGTCTAACAAGAAGTGGTCAGTCATTGATGAATGAACAGTTACCACAACAATCATGGACTCCAAAGTATGGAAATATGCAGGTCAATGCCTTTGGCAGCGCAATGTCACATGCACAATATTCTGGAAAAGATTCGGCTATAGTGCCTCCACATTGTGATTCAGATGCCCAAAATCATACTCTCTCGGGTGTCAATATCGATTCATCTGGTCTTCTACTCCCCACCACTGTCCCGAATTACACTGCTTCAACAACGGACACTGGTGCATCAACACAATTAGGGGAGTCTGGATTCCAGGGTTCTCTATATGCCTGCATGCAAGATTCATCATTTTTGCAAAATGCAGAGCAAATCGACACACAAAACCAGAACCCAACATTTGTGAAGGTTTACAAATCGGGATCGGTTGGGCGTTCACTTGACATCTCTAGGTTCAGCTGCTATCGTGAGCTGCGAGAGGAGTTGGGTCAAATGTTTGGAATTGAGGGGAAGTTAGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTTGACCGGGAGAATGATGTGCTTCTCCTTGGCGACGATCCGTGGGAATCATTCGTGAATAACGTTTGGTATATCAAAATACTTTCACCGGAAGATATTCAGAAGATGGGAGATCAAGCAGTAGAAATGCATGGACTAGGCTCGGGACAAAGGCTTAATGGCACTGGTGAATCTCACCACATTGTTTCTGGACAACCACCATCAATTGGCTCACTTGATTACTGA 2550 0.4525 MKLSTSGLGQQGHEGGGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLTPEEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHASATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLLDGRDEATNALMWMRGGPADQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAAGMQNMGGGYLMRPQMVNFQQQPTHYLQSGNNNSPLQLHQPQSIQQSVSSNMMQPQQTQILTENLSQHLLQKPNNNQELQAQQQQHAYQDTLLVQNDQLHQRQQQSNVPSPSYSKPDFLDSNIKFPASVPSGQNMLGSLCPEGTGNLLNLSSLTRSGQSLMNEQLPQQSWTPKYGNMQVNAFGSAMSHAQYSGKDSAIVPPHCDSDAQNHTLSGVNIDSSGLLLPTTVPNYTASTTDTGASTQLGESGFQGSLYACMQDSSFLQNAEQIDTQNQNPTFVKVYKSGSVGRSLDISRFSCYRELREELGQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGDQAVEMHGLGSGQRLNGTGESHHIVSGQPPSIGSLDY* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1932 849 CDD B3_DNA 129 230 IPR003340 GO:0003677
Mtr3g1932 849 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 834 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr3g1932 849 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr3g1932 849 Pfam AUX/IAA family 713 807 IPR033389 -
Mtr3g1932 849 Gene3D - 719 812 - -
Mtr3g1932 849 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Mtr3g1932 849 SUPERFAMILY CAD & PB1 domains 718 797 - -
Mtr3g1932 849 PANTHER AUXIN RESPONSE FACTOR 1 834 - -
Mtr3g1932 849 MobiDBLite consensus disorder prediction 829 849 - -
Mtr3g1932 849 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Mtr3g1932 849 MobiDBLite consensus disorder prediction 472 503 - -
Mtr3g1932 849 Gene3D - 294 366 - -
Mtr3g1932 849 SUPERFAMILY DNA-binding pseudobarrel domain 114 259 IPR015300 -
Mtr3g1932 849 Gene3D - 128 231 IPR015300 -
Mtr3g1932 849 SMART B3_2 130 232 IPR003340 GO:0003677
Mtr3g1932 849 ProSiteProfiles PB1 domain profile. 723 807 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1932 Mtr-Chr3 32305719 32313334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1932 100 824 B3 DNA Binding Superfamily AT5G37020 67.663 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr3g1932 AUX_IAA 1.5e-07 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1932 3 32305719 32313334 Mtr5g2585 5 33783577 33793621 PCT