Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1898 ATGGATACCACACTCTCCGTTCTCAAGGATTACTTCGGGTTTTTGAGTTTTCGACCTTATCAAAGAGAGGTTATTGAGAAAATTATTGAGAAAAGGGATTGCTTGGTAGTCATGGCTACTGGTAGTGGAAAGTCTTTGTGTTATCAAGTACCTCCATTGGTTGTGAAAAAGACTGGGATAGTTGTGAGCCCTTTAATATCATTGATGCAAGATCAGGTAATGGCTTTAAAACAGCGAGGTATCAAAGCTGAATATCTTTCAAGCGCTCAGAAGGATTACACTGTTCAGAGTAAAGCCGAGCGTGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAATTCCTACCAGTTTCTGGTCCAACTTGCTAAAAGAAGGAATTAGTCTTTTTGCCGTTGATGAAGCACATTGTATATCGGAATGGGGGCATGACTTTAGGGTGGAATACAAGCAGTTAGACAAGTTACGTGGTGTTCTGTTAGACGTTCCTTATGTTGGTCTAACTGCAACTGCTACTGAAAAGGTTCGGTTTGACATCACCAATTCCCTGAAGATGAATAATCCTTACGTTGTAGTTGGTTCATTTGATCGCCCAAATCTTTTTTATGGTGTCAAGCAATTTAACCGTGGACAATCTTTTATTGATGAGCTTGTGGAGGAAGTTTCAAAAGAAGTTGCTAATGGTTGTTCAACTATAATTTACTGCACAACAATCAAAGATGTAGAACAGATTTACAAGTCACTTACGGAAGTAGGTATTAATGCTGGAATGTACCATGGCCAAATGGATGGAAAATCACGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAAATGCAAATCATGGTGGCCACAATTGCCTTTGGCATGGGCATAGATAAACCTAATATAAGAAAAGTGATTCACTATGGCTGCCCAAAAAATCTAGAGTCTTACTACCAGGAAAGTGGTCGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGAGATTTTTATGCTGCAGACTTAAAATCGGAAAACCAAAAAAGAGCTGTGATGGAGTCATTGCTGGCTGCCCAACAATATTGTTTGTCGGCAACTTGCAGAAGAAAGTTCTTGCTTGAACACTTTGGGGAAAAAATTTCAGCTGAAAGATGTGGGAACTGTGATAACTGCAAAGTCTCGAAGCAGCAGCGTGACTTGTCAAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAACGGCAGATGGGGCCTTAATATGCCGATTGATATCCTGCGTGGTTCTCGAGCAAAGAAAATAATGGATGCTCAGTATGACAAGCTTCCACTTCATGGACTTGGTAAAACATACCAAGCAAATTGGTGGAAAGCACTCGGACATCAATTAATTTCCCTAGGTTATTTGAAGGAGGTTGTCCGTGACACATTCAGACTTATAAGTGTCAGTTCAAAAGGAGAGAAATTTTTGGCCTCTTGTAGACCAGACTATCAACCTCCTTTGGTTTTGCCATTGGTTGGTGAGCTTGAAGAGGAGGAAAATAGAAGCAGAGAAGAAATCAAAATTTTGCCCACTTCAGAATCAGAAGGTTTCTCGGAGGCTGAGGGACAGCTCTACCAAATGCTTTTAGAAGAAAGATTAAAGCTTGCAAAAAGTGTCGGAACAGCTCCATATGCTCTATGTGGTGATCAAACAATCAAAAAAATTGCTTTGACCAGACCATCTTCAAAAGCAAGGCTAGCACTCATTGATGGTGTGAATCAGCACCTAGTAACAAGATACGGAGAGTATTTTATTCAAGCTATCGAGAAACTATCACGAGAATTAAACCTATCGTTGGATGGTGTACCAAGCATTCAAACTAGTGAGGTACGGAAAGTATCTCCGATAGTTACCAACAAATCAACGAAGTTGTCAGGAGCGAAGTTTGATGCATGGAAAATGTGGCATGAAGAAGGTCTTTCTCTTCAGAAGATTGCTAACTTTCCTGGTAGATCAGCTCCTATACAAGAACAAACTGTTGCTCAGTATCTTATGGATGCTGCCCAAGAAGGATTACCGTTTGATTGGCCTAGATTCTGTGAGGCGATAGGGCTGAAACAAGATTACATATCAGCTATTCAGGCTGCTATTGTAAAAGTTGGATCTGCCGATAAGTTGAAGCCAATAAAAAATGAATTGCCAGAAGAAATAACATATCCGCACATCAAGGCTTACTTGACAATGCGAACCTGTGGAATATCCTTAGAAAGCATTCAATCTGAAGGTCACCAGTCTGTGAAAGATGGTGAAGCTGTAAACAATGCATCAAATTTGTCAGAGCCTCCTTTAGAAACACGCAACCTGGAAAGTCATATTGAAGCTGACATTTCTACGGAAAGCACGATGGAAATTGATGAAGTAGCATCTTCTGGACCTGTGAATGGTTGCCAGGTACAGAAGCTTCCATTATCCTGTGAGGAGGAATTCACAAGCAAACGTCTGAAAATCAGCGAAACAGAGGAAGTGAATTTAATTAAGTTGAAAGCTACAGAGAGTTCTGTTGTAGAGTGGCTGAAGAACCATGATGAAGGGGCTACTTTGACTGATATGTTGGAGCACTTCAATGGATCCAATGAAGATTCCATTGTTGAACTGCTAAATTCCCTTGAGAGTGACTTTTTGATATATAAGAAAGGTAATATGTACAGGGCTATGTAA 2727 0.4034 MDTTLSVLKDYFGFLSFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEYLSSAQKDYTVQSKAERGQFDILFMTPEKACTIPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLLDVPYVGLTATATEKVRFDITNSLKMNNPYVVVGSFDRPNLFYGVKQFNRGQSFIDELVEEVSKEVANGCSTIIYCTTIKDVEQIYKSLTEVGINAGMYHGQMDGKSREESHRLFVRDEMQIMVATIAFGMGIDKPNIRKVIHYGCPKNLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYAADLKSENQKRAVMESLLAAQQYCLSATCRRKFLLEHFGEKISAERCGNCDNCKVSKQQRDLSREAFLLMACIHSCNGRWGLNMPIDILRGSRAKKIMDAQYDKLPLHGLGKTYQANWWKALGHQLISLGYLKEVVRDTFRLISVSSKGEKFLASCRPDYQPPLVLPLVGELEEEENRSREEIKILPTSESEGFSEAEGQLYQMLLEERLKLAKSVGTAPYALCGDQTIKKIALTRPSSKARLALIDGVNQHLVTRYGEYFIQAIEKLSRELNLSLDGVPSIQTSEVRKVSPIVTNKSTKLSGAKFDAWKMWHEEGLSLQKIANFPGRSAPIQEQTVAQYLMDAAQEGLPFDWPRFCEAIGLKQDYISAIQAAIVKVGSADKLKPIKNELPEEITYPHIKAYLTMRTCGISLESIQSEGHQSVKDGEAVNNASNLSEPPLETRNLESHIEADISTESTMEIDEVASSGPVNGCQVQKLPLSCEEEFTSKRLKISETEEVNLIKLKATESSVVEWLKNHDEGATLTDMLEHFNGSNEDSIVELLNSLESDFLIYKKGNMYRAM* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1898 908 Pfam RecQ zinc-binding 351 400 IPR032284 -
Mtr3g1898 908 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Mtr3g1898 908 Gene3D - 2 198 IPR027417 -
Mtr3g1898 908 ProSiteProfiles HRDC domain profile. 541 621 IPR002121 GO:0003676
Mtr3g1898 908 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 372 IPR001650 -
Mtr3g1898 908 Gene3D - 402 525 IPR036388 -
Mtr3g1898 908 Gene3D - 200 401 IPR027417 -
Mtr3g1898 908 SUPERFAMILY "Winged helix" DNA-binding domain 398 501 IPR036390 -
Mtr3g1898 908 SMART helicmild6 245 326 IPR001650 -
Mtr3g1898 908 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 7 740 - -
Mtr3g1898 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Mtr3g1898 908 Gene3D HRDC domain 540 621 IPR044876 -
Mtr3g1898 908 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 6 458 IPR004589 GO:0004386|GO:0006310
Mtr3g1898 908 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Mtr3g1898 908 SMART hrdc7 541 621 IPR002121 GO:0003676
Mtr3g1898 908 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 740 - -
Mtr3g1898 908 Pfam RQC domain 403 500 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mtr3g1898 908 SUPERFAMILY HRDC-like 540 621 IPR010997 GO:0000166|GO:0044237
Mtr3g1898 908 SMART ultradead3 13 210 IPR014001 -
Mtr3g1898 908 Pfam Helicase conserved C-terminal domain 218 325 IPR001650 -
Mtr3g1898 908 CDD DEXHc_RecQ 5 199 - -
Mtr3g1898 908 CDD SF2_C_RecQ 200 335 - -
Mtr3g1898 908 Pfam HRDC domain 546 611 IPR002121 GO:0003676
Mtr3g1898 908 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mtr3g1898 908 Pfam Helix-turn-helix domain 654 749 IPR029491 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1898 Mtr-Chr3 31982297 31992070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1898 12 342 Eukaryotic Initiation Factors Gene Family AT3G19760 22.126 9.75e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1898 3 31982297 31992070 Mtr3g1898 3 31982297 31992070 ECH