Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1880 ATGGTGATTTCAAGGATGTTTTTTTCAAAAGGTTACAAGCATGAAGTTGTTTTCATTTTATGGTTTTGCTGCTATGTGTTACTTGTTGCTGCACAAGAGAATATAACTAACCCTACTGAAGTTGAAGCATTAAAAGCAATAAAGAAAAGGTTGATTGATCCTAATCGCAATTTGAGCAATTGGAATCGCGGAGACCCATGTACATCTCACTGGACAGGAGTTTTGTGTTTCAATGAAACATTAGTGGATGGCTACTTACATGTTCAAGAATTGCAACTAATGAATTTGAGCCTGTCTGGAAATTTGGCACCAGAAATCGGCAGCTTGGTTTATATGGAAAGATTGAACTTCATGTGGAACAAAATAACTGGGAGTATTCCAAAGGAAATTGGCAATATCAAATCGTTATTCCTCTTGCTCCTGAATGGAAATCAATTAACAGGTTCACTGCCAGAGGAGCTTGGATTTCTTCCGAAGCTTGACAGAATACAAATTGATCAGAACAATATATCAGGACCTCTACCTAAATCATTTGCAAACCTAAACAAGACAAAGCATTTTCACATGAACAATAATTCAATTAGCGGGCAAATCCCACCGGAACTTGCGCGATTACCATCACTTGTTCACTTCCTTCTTGATAACAACAATTTATCAGGATATCTTCCTCCTCAGCTATCACAACTACCAAACTTACTTATACTTCAACTTGACAACAATAACTTCGAAGGAAATAGCATTCCGGATACTTATAGTGACATGTCAAAATTGTTGAAGTTGAGCCTTAAGAACTGTAACTTGCAAGGACCGATTCCTGACTTAAGCCGTATACCACACCTTCTTTATCTTGACCTTAGTTCGAATCAGTTGAATGAATCACTTCCTTCCAAACTTGCAGAAAACATCACAACAATTGATTTATCAAACAACCAGCTTACTGGAAACATCCCGTCCTCGTTTTCTAGTCTTTCAAAACTTCAGAGATTGTCTCTTGCAAACAATTCATTGAATGGCAGTGTTCCTTCCACAATTTGGCAGGACAAGAAGTTAAATGGATCAGAAAGATTTATCTTGGAGTTGGAAAATAATCAATTCACAACTGTATCAGGCAGTACTGATCTTCCTTCAAAAGTCACAGTCTTGCTTCGTGGGAATCCTCTATGCTCAAATAACACCTTGAGTCAGTTATGTAGTTCTGAAGGTGTTAACAATACAGATGTCCTAGTTCCAACAAACAACAACGGTTCCTGTCTAGTTCAATCATGTCCGCCACCTTATGAATTCTCTTTGGATTGTTTCTGTGCAGCCCCGTTGCTTGTTGGTTATCGATTGAAAAGTCCCGGGTTTTCAGATTTCCTTCCTTTCAAAAATGAATTTGAGGAATACCTGACTACTGGTCTTAGTATAAACATCAGTCAGCTAAACTTTACTTTTCGGTGGGTAGCAGGACCTCGGTTAAGAATGGACTTGAAGTTTTTCCCTTTATATGTTGATCATAATAGTTCTCATACTTTCAATGAAACTGAGGTCCAACGAATTAGAAGCATGTTCACAGGATGGAATATTCCCGACAGTGATTTGTTTGGACCATATGAATTGATCAACTTCAATATGGGTTTATACCAGAACGCGACTTCCACCTCTTCAAAATCGGGGATAAGTACAGGTGCAATAGTTGGCATAGTCTTAGGGGCAATTGCATGTGCAGTGACGCTATCTGCTATTGTTACTCTTCTTATATTAAGAACAAAATTGAAAGATTATCATGCAGTTTCCAAACGGCGTCATGTGTCTAAAATCAAAATAAAAATGGATGGGGTAAGGTCCTTCACTTATGAAGAATTGTCCTCTGCTACGAACAATTTTAGCAGCTCCGCTCAAGTCGGACAAGGGGGCTATGGGAAGGTATATAAAGGTGTCATTTCTGGTGGAACAGCTGTTGCCATAAAACGTGCACAGGAGGGGTCACTGCAAGGCGAGAAGGAGTTCCTTACTGAAATATCGCTACTATCAAGGTTACATCATCGCAATCTTGTGTCTTTGATTGGATACTGTGACGAAGAAGGTGAACAGATGCTGGTTTATGAATATATGCCAAATGGCACACTAAGGGATCACCTTTCTGTTTCAGCAAAAGAACCGCTGACTTTTATCATGAGATTGAAGATTGCATTAGGGTCGGCTAAAGGTCTCATGTATCTGCACAATGAAGCCGATCCTCCAATATTCCATCGTGATGTCAAGGCCAGCAACATATTATTGGATTCTAAGCTCTCTGCTAAAGTCGCAGATTTCGGACTTTCACGGCTTGCACCAGTTCCAGATATGGAAGGAATTGTGCCTGGTCATGTATCTACTGTGGTAAAGGGTACACCGGGTTACCTTGATCCGGAGTACTTCTTAACTCACAAATTGACCGACAAGAGTGATGTTTATAGTCTCGGCGTTGTGTTTCTAGAAATTTTGACTGGGATGCATCCTATCTCACATGGAAAAAATATTGTTAGAGAGGTCAATCTTTCCTACCAATCTGGCGTAATATTTTCAATCATCGATGAACGAATGGGATCATATCCATCTGAGCACGTCGAGAAGTTTTTAACATTGGCCCTCAAGTGTGTTAACGACGAGCCAGATAATCGGCCTACAATGGCAGAGGTGGTTAGAGAGCTTGAAAACATATGGAATGTAATGCCGGAATCAGATACCAGAAGAGCTGAATCTATAACCAGTGGCAGTGTCAGTGATTCTAGTAAAGCAATGAGTACACCATCTTCATCCTCAGCTATAAGGACTGCTTTTGTATCAGGTGATGTGTCTGGTAGTGACCTTGTTAGTGGAGTAATACCAAGCATCAAGCCAAGATAA 2868 0.3985 MVISRMFFSKGYKHEVVFILWFCCYVLLVAAQENITNPTEVEALKAIKKRLIDPNRNLSNWNRGDPCTSHWTGVLCFNETLVDGYLHVQELQLMNLSLSGNLAPEIGSLVYMERLNFMWNKITGSIPKEIGNIKSLFLLLLNGNQLTGSLPEELGFLPKLDRIQIDQNNISGPLPKSFANLNKTKHFHMNNNSISGQIPPELARLPSLVHFLLDNNNLSGYLPPQLSQLPNLLILQLDNNNFEGNSIPDTYSDMSKLLKLSLKNCNLQGPIPDLSRIPHLLYLDLSSNQLNESLPSKLAENITTIDLSNNQLTGNIPSSFSSLSKLQRLSLANNSLNGSVPSTIWQDKKLNGSERFILELENNQFTTVSGSTDLPSKVTVLLRGNPLCSNNTLSQLCSSEGVNNTDVLVPTNNNGSCLVQSCPPPYEFSLDCFCAAPLLVGYRLKSPGFSDFLPFKNEFEEYLTTGLSINISQLNFTFRWVAGPRLRMDLKFFPLYVDHNSSHTFNETEVQRIRSMFTGWNIPDSDLFGPYELINFNMGLYQNATSTSSKSGISTGAIVGIVLGAIACAVTLSAIVTLLILRTKLKDYHAVSKRRHVSKIKIKMDGVRSFTYEELSSATNNFSSSAQVGQGGYGKVYKGVISGGTAVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSVSAKEPLTFIMRLKIALGSAKGLMYLHNEADPPIFHRDVKASNILLDSKLSAKVADFGLSRLAPVPDMEGIVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEILTGMHPISHGKNIVREVNLSYQSGVIFSIIDERMGSYPSEHVEKFLTLALKCVNDEPDNRPTMAEVVRELENIWNVMPESDTRRAESITSGSVSDSSKAMSTPSSSSAIRTAFVSGDVSGSDLVSGVIPSIKPR* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1880 955 MobiDBLite consensus disorder prediction 902 927 - -
Mtr3g1880 955 SUPERFAMILY L domain-like 51 402 - -
Mtr3g1880 955 CDD STKc_IRAK 628 894 - -
Mtr3g1880 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Mtr3g1880 955 Gene3D Phosphorylase Kinase; domain 1 592 697 - -
Mtr3g1880 955 ProSitePatterns Protein kinases ATP-binding region signature. 628 650 IPR017441 GO:0005524
Mtr3g1880 955 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Mtr3g1880 955 SUPERFAMILY Protein kinase-like (PK-like) 607 911 IPR011009 -
Mtr3g1880 955 MobiDBLite consensus disorder prediction 903 927 - -
Mtr3g1880 955 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 16 922 - -
Mtr3g1880 955 Pfam Protein kinase domain 624 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1880 955 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 922 - -
Mtr3g1880 955 SMART serkin_6 622 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1880 955 SMART LRR_typ_2 323 347 IPR003591 -
Mtr3g1880 955 SMART LRR_typ_2 277 301 IPR003591 -
Mtr3g1880 955 SMART LRR_typ_2 205 229 IPR003591 -
Mtr3g1880 955 Gene3D Transferase(Phosphotransferase) domain 1 698 915 - -
Mtr3g1880 955 Gene3D Ribonuclease Inhibitor 192 298 IPR032675 -
Mtr3g1880 955 Gene3D Ribonuclease Inhibitor 37 191 IPR032675 -
Mtr3g1880 955 ProSiteProfiles Protein kinase domain profile. 622 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1880 955 Gene3D Ribonuclease Inhibitor 299 390 IPR032675 -
Mtr3g1880 955 Pfam Leucine rich repeat 158 218 IPR001611 GO:0005515
Mtr3g1880 955 Pfam Leucine rich repeat 301 346 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1880 Mtr-Chr3 31730867 31738770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1880 6 904 Receptor kinase-like Gene Family AT5G01950 57.002 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Mtr3g1880 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1880 - - gmx:100786467 1433.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1880 3 31730867 31738770 Mtr3g1880 3 31730867 31738770 ECH
Mtr3g1880 3 31730867 31738770 Mtr5g2562 5 33482833 33491744 PCT