Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1879 ATGCATCTTTCAAATGGTTGTTGCAAGCATGTGGTTATCTTCATCATCTTATGGTTCTGCTGCTGTTTGATACCGGCTGCTGCGCAAGTTATCAATGTCACTGACCCTACTGAAGTATCAGCATTGAGGAGCATATATGAAAGTTTGAAGGATCCAAATGGACATTTGAGACATTGGAACGATGGAGACCCATGCCTATCTAGCTGGACAGGAGTTGTGTGCTCTAATGAAACAATAGAGGAAAACTTTCTACATGTTACTGAATTGGAACTACTGAAATTGAACTTGTCTGGAGAATTGGCACCAGAAATTGGCAACTTAGCTTATTTGAAAATATTGGATTTCATGTGGAACAATATAAGTGGGACAATTCCTGTGGAAATTGGCAATATCAAAACTTTGGAACTCTTATTCCTAAGTGGAAATGAATTAACAGGACAAGTGCCAGATGAACTTGGCTTTCTTCCAAATCTACGTATAATGCAAATTGATGAAAACAAATTATCAGGACCTATACCTTCTTCATTTGCAAATTTGAACAAAACAAAGCATTTTCACATGAACAATAACTCCCTTAGTGGTCAAATTCCACCAGAACTTTCCAAATTACCAAGCCTTATTCACCTCCTTCTTGACAACAATAACTTATCAGGAATTCTTCCACCTGAGCTATCCAAGATGCAAAACTTGTCTATACTCCAACTTGACAACAATAACTTTGAAGGAAATAGCATTCCAGATTCTTATGCCAACATGTCAAAATTGGTGAAGTTGACCCTTAGGAATTGCAACTTGCAAGGACCAATTCCTGATTTTAGCAAGATACCACACCTCCTTTATATTGACCTTAGCTTCAATCAATTGAGTGAATCAATTCCTCCTAATAAGCTTGGTGAAAATATCACAACCATTATTTTATCAAACAACAATCTTACTGGAACTATTCCATCCTATTTTTCTATTCTTCCACGTCTTCAGAAATTGTCACTTGCAAACAATTTATTGAGTGGAAGTGTTCCTTCCAACATTTGGCAGAACAAGATTTCAAATGCTGCTGAAATATTGCTATTAGAGTTGCAAAATAACCAATTTGTAAACATATCAGGCAATACTAATCTTCCTCCAAATGTCACACTCTTGCTTGATGGGAATCCACTATGCTCAGATAACACACTGAATCAGTTCTGTAAAGTTGAAGGAGCTAGTATTGACACAAATGGCACGTCTCCGACAAACTTCAGTGACCCTTGTCCCACTAAAAAATGTCCACCTCCTTATGAATATTCTGTTAATTGTTTCTGTGTGGCTCCATTGATTTTCGGTTATCGACTCAGAAGTCCTGGTTTTTCGTATTTTCCCCCGTATTTCAATACTTTTGAGGAATACTTGTCTTCTAATCTAAAGATACATCCCAATCAAATAAGCTATACGTTTGAGTGGCAAGTAGGACCTCGAATCCTAATGATCTTGAAGCTTTTTCCGGAATATGTTGATGAAAATAGTTCTCATATTTTCAATACAAGTGAGGTCCAACGGATCAGAAACATGTTCACTGGATGGACCATTCCTAACCGTGATTTGTTCGGGCCTTATGACCTTATGGATCCCGTTCCTTATAATAATGGGACTGACACCTCTTCAAAATCAGGCATAAGCACGGGTGCATTGGTTGGTATAATATTAGGCTCAATTGCATGTGTAATTTCGCTGTCTGCAATTTTTATTCTTTTAATCTTAAGAGTAAGATTAAGACGTCATGATGCAATTTCCAAACCACGTCATTCATCTAGGATATCAATGCAAATTGATGGGACAAGGGCTTTTACTTATGAAGAATTGTCTTCTGCTACAAGAAAATTTGACAACAATGCTCAAATTGGACAAGGAGGCTATGGGAAGGTATATAAAGGTATTCTTTCGAACGGGACTGTGGTTGCCATAAAACGTGCACAACAAGGATCGTTGCAAGGTGAGAAGGAGTTTCTTACAGAAATATCAATACTATCAAGGATACATCACCGTAACCTTGTAGCTTTGATTGGATATTGTGATGAAGCAGGTGAACAGATGCTAGTTTATGAATTTATGTCGAATGGCACACTAAGGGACCACCTTTCTGTTACATCAAACAAACCTTTGACCTTTGCTATGAGATTGAAGATAGCATTAGAGTCAGCTAAAGGTCTCATGTATCTACACACAGAAGCCGATCCTCCAATATTTCACCGAGATGTTAAATCCAGCAACATATTATTGGACTCTAAGTTCACTGCAAAAGTTGCAGATTTTGGGCTTTCACGACTTGCACCAGTTCCAGATATGGAAGGAATTGTTCCTGGTCATGTATCTACTGTGGTAAAGGGAACACCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACACATTAACCGACAAGAGTGATGTTTTTAGTCTCGGTGTTGTGTTTCTGGAACTTTTGACTGGGATGCAACCTATCTCACATGGAAAAAATATTGTTAGAGAGGTTAGTGTTGCATATGAATCGAGCGAGATATCATCATTTATTGATGAACGCATGGGGTCTTATCCATTTGAGCATGCAGAGAAGTTTTTAAATTTGGCCCTAAAGTGTTGCGAAGATGAGCCAGAGCCGCGTCCTAAAATGGCAGAAGTGGTTAGAGAACTTGAAGATATTTGTTCTGTGATGTCAGATTCAGATGCCATGAGAGATTCATCTACAAGCAGTGGTGGCAAAACAGTTAGCTTTGTAAGCAGTACAACTTCTTCATCCTCAACCATAAAGACTACTTTTGTATCAAGAAATGTATAA 2811 0.3814 MHLSNGCCKHVVIFIILWFCCCLIPAAAQVINVTDPTEVSALRSIYESLKDPNGHLRHWNDGDPCLSSWTGVVCSNETIEENFLHVTELELLKLNLSGELAPEIGNLAYLKILDFMWNNISGTIPVEIGNIKTLELLFLSGNELTGQVPDELGFLPNLRIMQIDENKLSGPIPSSFANLNKTKHFHMNNNSLSGQIPPELSKLPSLIHLLLDNNNLSGILPPELSKMQNLSILQLDNNNFEGNSIPDSYANMSKLVKLTLRNCNLQGPIPDFSKIPHLLYIDLSFNQLSESIPPNKLGENITTIILSNNNLTGTIPSYFSILPRLQKLSLANNLLSGSVPSNIWQNKISNAAEILLLELQNNQFVNISGNTNLPPNVTLLLDGNPLCSDNTLNQFCKVEGASIDTNGTSPTNFSDPCPTKKCPPPYEYSVNCFCVAPLIFGYRLRSPGFSYFPPYFNTFEEYLSSNLKIHPNQISYTFEWQVGPRILMILKLFPEYVDENSSHIFNTSEVQRIRNMFTGWTIPNRDLFGPYDLMDPVPYNNGTDTSSKSGISTGALVGIILGSIACVISLSAIFILLILRVRLRRHDAISKPRHSSRISMQIDGTRAFTYEELSSATRKFDNNAQIGQGGYGKVYKGILSNGTVVAIKRAQQGSLQGEKEFLTEISILSRIHHRNLVALIGYCDEAGEQMLVYEFMSNGTLRDHLSVTSNKPLTFAMRLKIALESAKGLMYLHTEADPPIFHRDVKSSNILLDSKFTAKVADFGLSRLAPVPDMEGIVPGHVSTVVKGTPGYLDPEYFLTHTLTDKSDVFSLGVVFLELLTGMQPISHGKNIVREVSVAYESSEISSFIDERMGSYPFEHAEKFLNLALKCCEDEPEPRPKMAEVVRELEDICSVMSDSDAMRDSSTSSGGKTVSFVSSTTSSSSTIKTTFVSRNV* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1879 936 Gene3D Phosphorylase Kinase; domain 1 591 695 - -
Mtr3g1879 936 MobiDBLite consensus disorder prediction 900 919 - -
Mtr3g1879 936 Pfam Leucine rich repeat 156 216 IPR001611 GO:0005515
Mtr3g1879 936 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Mtr3g1879 936 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 919 - -
Mtr3g1879 936 SMART serkin_6 620 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1879 936 SUPERFAMILY L domain-like 48 403 - -
Mtr3g1879 936 Gene3D Transferase(Phosphotransferase) domain 1 696 911 - -
Mtr3g1879 936 SMART LRR_typ_2 275 300 IPR003591 -
Mtr3g1879 936 SMART LRR_typ_2 322 346 IPR003591 -
Mtr3g1879 936 SMART LRR_typ_2 203 227 IPR003591 -
Mtr3g1879 936 SMART LRR_typ_2 155 178 IPR003591 -
Mtr3g1879 936 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 919 - -
Mtr3g1879 936 SUPERFAMILY Protein kinase-like (PK-like) 594 889 IPR011009 -
Mtr3g1879 936 CDD STKc_IRAK 626 892 - -
Mtr3g1879 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Mtr3g1879 936 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Mtr3g1879 936 Gene3D Ribonuclease Inhibitor 295 412 IPR032675 -
Mtr3g1879 936 Pfam Protein kinase domain 622 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1879 936 ProSiteProfiles Protein kinase domain profile. 620 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1879 936 Gene3D Ribonuclease Inhibitor 34 294 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1879 Mtr-Chr3 31715588 31723392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1879 9 900 Receptor kinase-like Gene Family AT5G01950 55.298 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Mtr3g1879 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1879 - - gmx:100786467 1285.01