Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1875 ATGATCCCACAACAAGATTCCGAGTTTGATTCCAATTGTCTCAAACCATATTACGGAAAGCTGTTTCCTTATGCTGATATATTTAAATGGATGTCTTATGGCCACGATGGGAAACATCCTGGTTGTGATCAGTCCTACTTTGGAAGAAGGGAATTTTCCTTCACTTTGAATGGTGACTTTTATCTGCGCTTCCAATCTTACAACAATGCCCTTGAGCTCGAAAAAGCCATCAAAGAAAAATGCCCTTTAAAGATTGACATTGGACCTGTCTACACAGTCGATCCTGCAAAAAGGCATGCCTATGCACAAAGTGATAATAATGTCTTCACTCCAGTTGAGAGGGAGTTGATTTTTGATATTGATATGACAGATTATGATGATGTCAGATACTGCTGCAAGGGGGCTGATGTTTGCTTGGATTGCTGGCCATTGATGACCATAGCCATCAAAGTGATTGATACTTCCTTAAGAGATGACTTTGGCTTCAAGCACATACTCTGGGTCTATAGTGGACGAAGAGGTGTTCACTGTTGGGTGTGTGATGGGAAGGCAAGAAGGTTGACTAATGAGCAAAGAGCTTCTGTTGCTGACTATTTTCGTGTTTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCGACATCATACACCAACGTTCTCAAAGACTATTTCGAGAAAGTACTGCTTACACGTCAAAACTTACTCGCTACTGAGGAGAGATATGAGAAGATCCTAAGCATGATTCCTGATGAATCTATTGCTTCTGAACTTAGGGGAAAATGGCAAGACAGTAGGCGTTCCTCTAGTGCAAAAGAAGATATTAATATTGTACGATGGGAACAGTGCAAGCAGTTGTTGCAATCTGGAAAACATAAGTCACAAGGGTTGCGTAGATGTGTTGAAGAGATTGTGTTCTGCTATACTTACCCCAGGCTAGATATGGAGGTTTCAAAACATATGAATCATTTGCTTAAAGCTCCATTTTGTGTACATCCAAAAACAGGTCGTGTCTGTGTCCCTATTGACCCAAATCGATGCGACGAGTTCGATCCTACTACAGTACCCACTGTTTTCCAGCTTTTAGAAGAGCTTAATAATGAAGGCTTGAGAGCCGATGTTAATGGTGAGAGGAGTGGAACTTCCCTTGGAAACTCCGTTACGCTTTTCAGATCATCGTTCTTAGAACCTTTACAAAAAGGCAGCAAGGAGGAGATAGAAAGATCCTATAATTTAAAGTTGCAGCAGTCAAAGAACTCCATAGGTTGGTAG 1302 0.4117 MIPQQDSEFDSNCLKPYYGKLFPYADIFKWMSYGHDGKHPGCDQSYFGRREFSFTLNGDFYLRFQSYNNALELEKAIKEKCPLKIDIGPVYTVDPAKRHAYAQSDNNVFTPVERELIFDIDMTDYDDVRYCCKGADVCLDCWPLMTIAIKVIDTSLRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRASVADYFRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKDYFEKVLLTRQNLLATEERYEKILSMIPDESIASELRGKWQDSRRSSSAKEDINIVRWEQCKQLLQSGKHKSQGLRRCVEEIVFCYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCDEFDPTTVPTVFQLLEELNNEGLRADVNGERSGTSLGNSVTLFRSSFLEPLQKGSKEEIERSYNLKLQQSKNSIGW* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1875 433 Pfam DNA primase small subunit 118 353 IPR002755 GO:0003896|GO:0006269
Mtr3g1875 433 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 16 369 IPR014052 GO:0003896|GO:0006269
Mtr3g1875 433 CDD AE_Prim_S 23 362 IPR014052 GO:0003896|GO:0006269
Mtr3g1875 433 PANTHER DNA PRIMASE SMALL SUBUNIT 20 433 IPR014052 GO:0003896|GO:0006269
Mtr3g1875 433 Gene3D DNA primase, PRIM domain 1 414 - -
Mtr3g1875 433 SUPERFAMILY Prim-pol domain 9 377 - -
Mtr3g1875 433 PANTHER DNA PRIMASE 20 433 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1875 3 433 Core DNA Replication Machinery Family AT5G41880 67.593 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1875 K02684 - gmx:100780574 785.793