Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1873 ATGACCGTACAATCAACCTTAAAGCTTCAAAACCCTTCAAGCTCGAATTTTGAACCCGACCCATCATGCAAAACCACCACAAAAACCAAACCCAACAACAAAAAGCTTCTCCGGGTCATTTTCACCGACCACAACGCAACCGATTCAGAATCCTCCGGCGACGATGAAACCCCACGAAGAGTGAAGAAGGAAATCACTAACATCACCATGCAATTTCCTTCTCTCACTGATTCTCAAGCAACTTCACCTTCTTCTTCATCTTGCTCCATTAACCCGACCCATTTAAATAAACCCAGAAAACGACCCACAAAAAACTCCGGCGGTTCTAACCGCCGGAGCATATTCCGTGGTGTTCGCAAAAGACCTTCGGGTCGGTGGATATCAGAGATCCGTGACCCGTTTCAAAGAAAACGTCTCTGGCTCGGAACTTTCAACACAGAGAAGGAAGCCGCCGCTGTTTACGACGCCGCCGCTGCGAAGATCTATGGTCCAAAAGTCGCCGCCGTCAACTTTCCAAACGATGCCTCCGACAAGAAAAGCGTTAAAGGTTCGCCTGAGATTTTCTCCGGCGACGGTTTTGCTTCTCCGACATCCGTTCTACCTTTCTGCGACGGCGAAACGCCGTTTGACGGTTTACGTTACGGAGCTGTGGATGCGTTTGGCTTTGATATTGACGCGCCGTTAAATTTAACGGATGTTAACTTTGTTCCGTTCGAGAAAGAAAAAGAAGAGTTTGGTGAGTTTGACTTGGACGAGTTCTTGACATGGCCAAGTTAA 777 0.4775 MTVQSTLKLQNPSSSNFEPDPSCKTTTKTKPNNKKLLRVIFTDHNATDSESSGDDETPRRVKKEITNITMQFPSLTDSQATSPSSSSCSINPTHLNKPRKRPTKNSGGSNRRSIFRGVRKRPSGRWISEIRDPFQRKRLWLGTFNTEKEAAAVYDAAAAKIYGPKVAAVNFPNDASDKKSVKGSPEIFSGDGFASPTSVLPFCDGETPFDGLRYGAVDAFGFDIDAPLNLTDVNFVPFEKEKEEFGEFDLDEFLTWPS* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1873 258 MobiDBLite consensus disorder prediction 1 35 - -
Mtr3g1873 258 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 254 - -
Mtr3g1873 258 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Mtr3g1873 258 MobiDBLite consensus disorder prediction 66 120 - -
Mtr3g1873 258 PIRSF PTI6 1 258 IPR017392 GO:0003700
Mtr3g1873 258 MobiDBLite consensus disorder prediction 1 33 - -
Mtr3g1873 258 SUPERFAMILY DNA-binding domain 113 173 IPR016177 GO:0003677
Mtr3g1873 258 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 30 254 - -
Mtr3g1873 258 MobiDBLite consensus disorder prediction 67 96 - -
Mtr3g1873 258 CDD AP2 113 174 IPR001471 GO:0003700|GO:0006355
Mtr3g1873 258 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Mtr3g1873 258 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Mtr3g1873 258 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
Mtr3g1873 258 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Mtr3g1873 258 Pfam AP2 domain 115 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1873 Mtr-Chr3 31638391 31639167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1873 32 212 AP2-EREBP Transcription Factor Family AT4G27950 38.835 1.63e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr3g1873 AP2 4.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1873 K13434 - gmx:102660028 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1873 3 31638391 31639167 Mtr3g1873 3 31638391 31639167 ECH
Mtr3g1873 3 31638391 31639167 Mtr5g2558 5 33435047 33436865 PCT