Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1858 ATGTCGTATGTTCCTCCACACTTGAGAAACGCGGCGAGTTCAACCACCGTGTCCACCAACACCGGAACCCTAGACAACCACCACCACCACCATCATCACAACAACAACCTCGCATTCTCAAACTCACATTCCAACTCTCCTTCTCTCTTCAATGCCTCTCGCCGTACCTCCGCTGCTCCTCCGTCGTCAAGGACCATCGCCGCCGTTCCTGATACTGTCTTCCCTAAATGGCAACCTTCTGAACGCGTTTCTCGCATGAACCCTGACCAGATTGAAGAGGTCCGCCATCGGCTAAATCTTGATGTTACTGTTTCGTCTGACTCTCTTGCTGCACCTGCACCTATAGAATCATTTAATGATATGTGTTTGCATCCAAGTATCATGAAGGACATTGCCTATCATGATTACACCAGACCAACTTCTATCCAGGCACAGGCCATGCCTATTGCTCTCAGTGGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGCGGGAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTCCAATTCGGCGCGGAGACGGTCCCTTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTCCAAGCTTTTAGCAGATCTCTCGAGTCATTTAAAACTGCCATAGTTGTCGGTGGAACTAACATCGAAAAGCAGAGGTCTGAACTAAGAGCGGGAGTTGAAATAGCAGTTGCCACCCCTGGAAGGTTCATTGACCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTATGTTGTTCTAGATGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCGCAGATAAGAGAGATAATGAGAAGTCTTCCCGAGAAGCATCAAACACTGCTGTTCAGTGCAACTATGCCTGTTGAGATCGAAGCATTGTCAAAGGAGTACTTAGCTAGCCCCGTGCAAGTTAAGGTGGGAAAAGTGAGCAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGATCGACTTCTAGATTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAGTGTGGCCATCCATTTCCATTGACAATTGTGTTTGTTGAGAGAAAGACAAGGTGTGATGAAGTTGCTGAAGCATTAATTGCTCAAGGATTATCTGCAGTTTCTTTGCATGGTGGCCGCAGTCAAAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTAGCTCAACGAGCATTTTGGTTGCCACCGATGTTGCATCTCGGGGCTTGGATGTCACAGGAGTGTCACACGTCATCAATCTTGATCTTCCAAAGACCACAGAAGATTATATACACCGAATTGGAAGGACAGGGCGTGCAGGATCAACTGGCATAGCCACCTCCTTTTATACTGATCGTGACATGTTTCTTGTGTCAAATATAAGGAAAGCCATAGCTGATGCTGAATCTGGGAACGCTGTGGCATTTGCTACTGGGAAGGTTGCCAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACACAAAGAGGCAAACATTGCTTTATCGAAACACCTTGGACCGGGAGCTGCTTCAATTAACATAGAAGATAAGTATAGATTCATGATTGCTGCCTCAAACAGTAAAGGAGAGGGCACGGCGGATAGTGCATGGGATGATTGA 1686 0.4632 MSYVPPHLRNAASSTTVSTNTGTLDNHHHHHHHNNNLAFSNSHSNSPSLFNASRRTSAAPPSSRTIAAVPDTVFPKWQPSERVSRMNPDQIEEVRHRLNLDVTVSSDSLAAPAPIESFNDMCLHPSIMKDIAYHDYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESFKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALSKEYLASPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALIAQGLSAVSLHGGRSQSEREAALHDFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFLVSNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIALSKHLGPGAASINIEDKYRFMIAASNSKGEGTADSAWDD* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1858 561 MobiDBLite consensus disorder prediction 1 67 - -
Mtr3g1858 561 Gene3D - 329 522 IPR027417 -
Mtr3g1858 561 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 269 277 IPR000629 -
Mtr3g1858 561 CDD DEADc 127 324 - -
Mtr3g1858 561 MobiDBLite consensus disorder prediction 7 23 - -
Mtr3g1858 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 484 IPR027417 -
Mtr3g1858 561 Pfam Helicase conserved C-terminal domain 347 464 IPR001650 -
Mtr3g1858 561 Gene3D - 76 327 IPR027417 -
Mtr3g1858 561 CDD SF2_C_DEAD 335 473 - -
Mtr3g1858 561 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 17 526 - -
Mtr3g1858 561 Pfam DEAD/DEAH box helicase 140 310 IPR011545 GO:0003676|GO:0005524
Mtr3g1858 561 SMART helicmild6 383 464 IPR001650 -
Mtr3g1858 561 SMART ultradead3 135 338 IPR014001 -
Mtr3g1858 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 323 IPR014001 -
Mtr3g1858 561 MobiDBLite consensus disorder prediction 37 63 - -
Mtr3g1858 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 505 IPR001650 -
Mtr3g1858 561 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 17 526 - -
Mtr3g1858 561 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 116 144 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1858 Mtr-Chr3 31306076 31315710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1858 116 486 Eukaryotic Initiation Factors Gene Family AT1G72730 35.467 5.19e-70 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1858 K12823 - gmx:100818387 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1858 3 31306076 31315710 Mtr3g1858 3 31306076 31315710 ECH