Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1854 ATGGGTTCTGACATTGGTATGGTGAATGGTTCGTGTGTTCATGAATGGAAGAAAGGGTGGGGTTTACGATCTGGTGGATTTGCTCAACTTTGCTTCAAGTGCGGATTTATGGAGGAATGGAAGAGTGGCAACCTTGACACATTATCTCCCTTTGAGAGTTCAGTTTTTTGTAATAAATTCCATCGTCAACAAACTGGTTGGCGAGAGTGTAACTTTTGCAACAAGCCTATCCACAGTGGATGCGTAGTATCTAAATCTCTGTTCGAGTATCTTGACTTCGGTGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCAACTAAATATGATTCGTAATACTGAAAATCCTAAATGGCCCGTTTCATCAACCCAAAATAATGCAAGGGATATTCATTCTGCTCATTTTGACAGCGGACTGTTTATGAGTAATGTTGATGAAGGAAAGCTTATGCAATTATGCAGAGTAGTTGAAGCCAGTGAATCTATCCATATGAGTCATGCTCCGATAAACAACATGATTACATCTAATGGGAAAAACAATCCAGAAGTTAGGCCTTCATTCAGGGAAGGGGATACTGGATTTTCAAATGTGATTAAGCCGCCTGTTCAGTCATTAACTTTTGCTACATTAGAAAATAATAGACCAACATGGGAGATTAAAAACATGCATGAATCAAATGCGAGGCCGTCTTTGAATATGTGTTTGGGAAACCCATCAGGGAACAACTCTTTCCCACCATCTGGTGGAGAGACTACAGACGGAAGACTTGAGGGAAAAGTATCTCCTCCTTTTCATCAAGGGCCAAGATCTCGTCCTATATTACCCAAACTGTTGAAGACTGGCCTTACCATGAATATAGAAACCGAAAAAGGGACACTTTCTCAACCACGTATTGCCCGGCCTCCTGGTGATGGGAGGGGCAAGAATCAGTTACTTCCTAGATATTGGCCTAGGATTACGGACCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAGTCCACAGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCAAGTGATGCAGGTCGGATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCATATTTTCCTCATATTACACACTCCGAAGGTCTTCCTTTGCGGGTCCAAGATGTGAAGGGTAATGAATGGACTTTTCAATTCAGATTTTGGCCTAATAACAACAGCCGGATGTACGTATTGGAGGGTGTGACCCCTTGCATACAGGCCATGGATTTACGTGCTGGTGATACCGTTACATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATGGGTTTCAGAAAGTCATCAAATTCCGTAGATACGCAGGATGCTTCTACATCTGCACATTCTAATGGCGGTTCTGCAAAAGGAGACACCTTTTCTGGTGGAAATGAGAATCTTCCATCAGGAAGTAATTGTGCCGATCTTCTCCGTTCACCAAATGCTAACGGGGAACTTCGTTTAAATGGACATCCAGAACCTTCACATTTGGTTACTGGAGCTGCTGGTTTGCTTAAAGCCGAAAATGGCGAGATGACGAGCAATAATTCACTGGACCAAAAAAATTCAGCTTTAGAGAAGAAGAGGACTCGAAATATTGGCCTTAAAAGTAAGAGATTGCTTATTGGTAATGATGATTCTATGGAGTTGAGGCTTACATGGGAAGAAGCACAAGACTTGCTTCGCCCACCGCCCAGTGTCAAGCCAAGCATTGTCACAATTGAGGATCAAGTATTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACAATATTCAGTGCCTCTTCATCTGGGGCGAAGGAACAGTGGGCTCAATGTGATGATTGCTCTAAATGGAGAAAGTTACCAGTTGATGCTCTTCTTCCTCCTAATTGGGCATGTTTGGAAAATGTCTGGGATACAAGCAGATCTTCATGTTCCGCACCGGACGAGCTGAGCTCAAGGGAATTAGAAAATCTTTTGAAATCCAGCAAAGATTTTAAGAAGCGACGGATTGTAGAAAACAGCAAGTTGATCCAAGAACACGAGCCTTCTGGCTTAGACGCTCTTGCCAGTTTAGCTGTTTTAGGCGAAAATCTCTTGGGCCCTGCTGATTCCTCAGCTGGAGCCACCACTAAACATCCTAGACACCGTCCCGGCTGCTCTTGTATCGTGTGCATTCAGCCACCAAGCGGAAAAGGGAGACACAAGCCAACATGTACTTGCAACGTGTGTACGACCGTGAAGCGTCGGTTTAAAACCCTTATGCTACGCAAGAAGAAACGCCAATCGGAGCGTGAAGCAGATGCTGCAGCCAAAAAAGAACACATTCACAAAAGAGTTGAGGAGTCAGATACCAATGGGGGAGCATCAAGAGAAGTCGCGAATCCTTTGGAAAACGAAGGAGGACTAAATAAAGGTCAAGTCGAGGTTGGCGAGTCCAGCGCTGGAAAGATAGATCTTAATTGTCATCCCAATCGTGATGACTTGCAAGTGGATAATATCGCAAAACTTAGTGATCATATATGGGAACATATTAATATGAACCAAAATGGCGGTCCAAGAACCGTTAATACTGAAATGCAGGAAGGTCAACATTCTTCTTTGGTCACTCAGTCTAATGGTGAAGATACGAGATACTTGTCCGAGGAAAGATGCATTGCATCCACTGTTAGGAACAAAGAAAGAAAAGATGAGGTATTAAATCATTCAAATGAAAGTGAAAAGAATCTGTCTTGA 2736 0.4317 MGSDIGMVNGSCVHEWKKGWGLRSGGFAQLCFKCGFMEEWKSGNLDTLSPFESSVFCNKFHRQQTGWRECNFCNKPIHSGCVVSKSLFEYLDFGGIGCVSCVNTSQLNMIRNTENPKWPVSSTQNNARDIHSAHFDSGLFMSNVDEGKLMQLCRVVEASESIHMSHAPINNMITSNGKNNPEVRPSFREGDTGFSNVIKPPVQSLTFATLENNRPTWEIKNMHESNARPSLNMCLGNPSGNNSFPPSGGETTDGRLEGKVSPPFHQGPRSRPILPKLLKTGLTMNIETEKGTLSQPRIARPPGDGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHITHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMDLRAGDTVTFSRIDPGGKLVMGFRKSSNSVDTQDASTSAHSNGGSAKGDTFSGGNENLPSGSNCADLLRSPNANGELRLNGHPEPSHLVTGAAGLLKAENGEMTSNNSLDQKNSALEKKRTRNIGLKSKRLLIGNDDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGAKEQWAQCDDCSKWRKLPVDALLPPNWACLENVWDTSRSSCSAPDELSSRELENLLKSSKDFKKRRIVENSKLIQEHEPSGLDALASLAVLGENLLGPADSSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKKEHIHKRVEESDTNGGASREVANPLENEGGLNKGQVEVGESSAGKIDLNCHPNRDDLQVDNIAKLSDHIWEHINMNQNGGPRTVNTEMQEGQHSSLVTQSNGEDTRYLSEERCIASTVRNKERKDEVLNHSNESEKNLS* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1854 911 SUPERFAMILY DNA-binding pseudobarrel domain 337 440 IPR015300 -
Mtr3g1854 911 MobiDBLite consensus disorder prediction 437 482 - -
Mtr3g1854 911 ProSiteProfiles Zinc finger CW-type profile. 603 653 IPR011124 GO:0008270
Mtr3g1854 911 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Mtr3g1854 911 Pfam CW-type Zinc Finger 608 650 IPR011124 GO:0008270
Mtr3g1854 911 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 857 - -
Mtr3g1854 911 MobiDBLite consensus disorder prediction 756 807 - -
Mtr3g1854 911 MobiDBLite consensus disorder prediction 290 311 - -
Mtr3g1854 911 SMART B3_2 339 439 IPR003340 GO:0003677
Mtr3g1854 911 MobiDBLite consensus disorder prediction 438 482 - -
Mtr3g1854 911 Gene3D - 606 661 - -
Mtr3g1854 911 Gene3D - 317 444 IPR015300 -
Mtr3g1854 911 CDD B3_DNA 337 438 IPR003340 GO:0003677
Mtr3g1854 911 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Mtr3g1854 911 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 857 - -
Mtr3g1854 911 MobiDBLite consensus disorder prediction 759 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1854 Mtr-Chr3 31239087 31246853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1854 1 836 B3 DNA Binding Superfamily AT2G30470 47.456 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g1854 B3 1.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1854 - - gmx:100789848 1373.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1854 3 31239087 31246853 Mtr3g1854 3 31239087 31246853 ECH
Mtr3g1854 3 31239087 31246853 Mtr5g2552 5 33350126 33356202 PCT