Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1843 ATGGCGACACAAATGCAAGATCCCAATGCACCTTCTTCCAACGTCTTCATCCGCGGCAGCGTCAACGGCGTCTCCACCACCGCCACCGTCGCCGGCGAACCCCACTCTCACCACCGTCGCGCCCACTCCGAAATCAACTACCGTCTCCCCGACGACATTATGGACCTCTCCCCTTCCGATCCCTTAACCGGCGGCGGATCCTCCACCGCCAGCCTCGACGAGATCGGATCCGAAGACGATCTCTTCTTCACCTACATTGACGTCGAGAAGCTCGGAGGAGTTACAAACGGTTCGAATACGAATCAGACCGGTTACGGAAATTGCGCCGGTGCCGGAGCCGGAGCCGGCTCCGGAACGAGTGGTAATAATGATGGAGAGAAGAGTGGGAACGATGCTACGACGCCGAGAACGAGGCATAGACATAGTTGTTCGGTTGATGGATCAACGTCGACGACGAATATGTTTGGAGAGATCATGGATGCGAAGAAAGCTATGCCTCCTGATAAACTCGCTGAGCTTTGGACTATTGATCCAAAACGTGCTAAGAGAATACTTGCAAACCGGCAATCTGCTGCACGTTCAAAGGAGAGAAAGGCCCGCTATATTCAAGAGCTTGAGCGCAAGGTTCAGACCCTTCAAACAGAGGCTACAACTCTCTCCGCCCAATTGACATTATACCAGAGGGACACAAATGGTCTGAGTACTGAAAATACCGAGCTCAAGCTCCGTCTGCAATCCATGGAACAACAGGCACACCTTCGAGATGCTCTTAATGATGCGTTGATGAAGGAAGTTGATAGGCTTAAGATTGCTACCGGGGAGGCAATGAACCCCTCTGAATCTTATAATATGGGAATGCACCAGCTGCAATTTGCAGGGTCAAATTTCTTTTCAATGCCACAACATTCAGGTCCTTCGGGTCACCAGAACATACAATTTCCCCAATTTGGTCACTCCCCATCTGACATGCCAAATTATCAGTTGCAACAAACCAATTCTCACCAAATCTCAGATATGTTGCAAAATGATCAGCTCGGTCGTTTGCAGGGGCTTGACATCAGTAGCAAAGGATCAACCCTCGTGAAATCTGAAGCCCCCTCAATCTCTGCAAGTGAGAGTAGCACTACATTTTGA 1134 0.5035 MATQMQDPNAPSSNVFIRGSVNGVSTTATVAGEPHSHHRRAHSEINYRLPDDIMDLSPSDPLTGGGSSTASLDEIGSEDDLFFTYIDVEKLGGVTNGSNTNQTGYGNCAGAGAGAGSGTSGNNDGEKSGNDATTPRTRHRHSCSVDGSTSTTNMFGEIMDAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTNGLSTENTELKLRLQSMEQQAHLRDALNDALMKEVDRLKIATGEAMNPSESYNMGMHQLQFAGSNFFSMPQHSGPSGHQNIQFPQFGHSPSDMPNYQLQQTNSHQISDMLQNDQLGRLQGLDISSKGSTLVKSEAPSISASESSTTF* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1843 377 MobiDBLite consensus disorder prediction 115 150 - -
Mtr3g1843 377 SMART brlzneu 175 239 IPR004827 GO:0003700|GO:0006355
Mtr3g1843 377 Coils Coil 230 250 - -
Mtr3g1843 377 MobiDBLite consensus disorder prediction 358 377 - -
Mtr3g1843 377 Gene3D - 178 231 - -
Mtr3g1843 377 PANTHER BZIP TRANSCRIPTION FACTOR 1 374 - -
Mtr3g1843 377 MobiDBLite consensus disorder prediction 298 327 - -
Mtr3g1843 377 MobiDBLite consensus disorder prediction 116 130 - -
Mtr3g1843 377 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 374 - -
Mtr3g1843 377 SUPERFAMILY Leucine zipper domain 179 230 IPR046347 GO:0003700|GO:0006355
Mtr3g1843 377 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 177 240 IPR004827 GO:0003700|GO:0006355
Mtr3g1843 377 CDD bZIP_plant_RF2 180 229 IPR044759 GO:0003700|GO:0006355
Mtr3g1843 377 Pfam bZIP transcription factor 179 236 IPR004827 GO:0003700|GO:0006355
Mtr3g1843 377 Coils Coil 195 222 - -
Mtr3g1843 377 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1843 Mtr-Chr3 31113032 31116151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1843 5 377 bZIP Transcription Factor Family AT2G40620 47.304 1.64e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr3g1843 bZIP_1 8.4e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1843 - - gmx:100790732 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1843 3 31113032 31116151 Mtr3g1843 3 31113032 31116151 ECH
Mtr3g1843 3 31113032 31116151 Mtr5g2550 5 33337683 33341436 PCT