Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1840 ATGGCTAGAGGAATTATGAAGAAGATTAATGAAATTAGCACTCTTTGTGGAATAGAAGCCGGTGCAATAATTTACGAGCAAAACAATCCTGAAGTACAGGTTTGGCCATCAGATTCAGGGGTTAGAAGTGTGATATCCAGGTTTAGGAGTTTGCCTGGACTAGAACGAAGTAAAAAGATGGTGGATCAAGAAGTATTCTTGAGGCAAAGCATTGGAAAAGTCTATGAGCAGTTGAAGACACAAATGAAGGAAACCAGAAAGAAGGAAATGACCAATATCATTCATCATTTCATTCATACCACAGAATTTAATGGATATTTAATGAGCAAACCTGATCTTAATGATTTGTCCTATGTTATTGATGAGAATTTGAGGGAGGTCAATCAAAAGATGAAAGGAATGCGAATTGAAGATTGA 417 0.3645 MARGIMKKINEISTLCGIEAGAIIYEQNNPEVQVWPSDSGVRSVISRFRSLPGLERSKKMVDQEVFLRQSIGKVYEQLKTQMKETRKKEMTNIIHHFIHTTEFNGYLMSKPDLNDLSYVIDENLREVNQKMKGMRIED* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1840 138 PANTHER MADS BOX PROTEIN 3 134 - -
Mtr3g1840 138 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 134 - -
Mtr3g1840 138 SUPERFAMILY SRF-like 3 70 IPR036879 GO:0003677|GO:0046983
Mtr3g1840 138 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 29 IPR002100 GO:0003677|GO:0046983
Mtr3g1840 138 Gene3D - 2 70 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1840 Mtr-Chr3 31088948 31089631 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1840 9 135 Type I MADS-box Gene Family AT5G48670 44.094 4.79e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g1840 SRF-TF 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1840 - - mtr:MTR_3g465410 205.682