Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1838 ATGACTAGGAAGAAGGTGAACCTTGCCTACATCACCAGTGACGCAAAGAGGAAGGGAACATTCAAGAAGAGAAAGAATGGTTTGATCAAGAAGATTGATGAAATCAGCACGCTCTGTGGGATCGAAGCGTGCGCTATCATCTTTGATCAAAACGATCCTCAACCAGAGGTCTGGCCTTCACCATGGGGAGTGCAAACAGTGCTGTCAAAGTTTAAGAGATTGCCCGAACTTGAGCAAAGCAAAAAAATGTTCAATCAAGAGAGTTTCTTGAAGCAAAGGATCCAAAAAGCTCAAGAACAGCTGAAGAAACAAAGGAACGACAACAAAAGGAAGGAAATGACCCATCTGATGTTTCAATGCCTTAATGCTGGTCAGATTTTTGACCATGTTGGCATGGATGATCTCAATGATATCTCATGGTTGATCGATCAGAACTTGAAACAGATCGATAGGAAACTCGATCAGTCTCAAGCTGAAGAGGTTGTTCAAAACCAAGCTGGAAATGTGAGTGGAGGGGAGCAGGGAATGGAGAACATTGCTGATCCAATGCAAAGGCAGCATTGGCCAATGGATTTCACCAACAACAACATTGGTGATGTGTTACCATTTGAAAATGGTAACAATGTACCATTTGGTAACAATGTGCCACATGGTTTCTGGCCTTGA 666 0.4279 MTRKKVNLAYITSDAKRKGTFKKRKNGLIKKIDEISTLCGIEACAIIFDQNDPQPEVWPSPWGVQTVLSKFKRLPELEQSKKMFNQESFLKQRIQKAQEQLKKQRNDNKRKEMTHLMFQCLNAGQIFDHVGMDDLNDISWLIDQNLKQIDRKLDQSQAEEVVQNQAGNVSGGEQGMENIADPMQRQHWPMDFTNNNIGDVLPFENGNNVPFGNNVPHGFWP* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1838 221 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Mtr3g1838 221 PANTHER MADS BOX PROTEIN 2 171 - -
Mtr3g1838 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mtr3g1838 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr3g1838 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr3g1838 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr3g1838 221 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mtr3g1838 221 Coils Coil 87 114 - -
Mtr3g1838 221 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr3g1838 221 Gene3D - 14 119 IPR036879 GO:0003677|GO:0046983
Mtr3g1838 221 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 171 - -
Mtr3g1838 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1838 Mtr-Chr3 31046734 31048134 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1838 1 173 Type I MADS-box Gene Family AT5G48670 52.000 1.56e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g1838 SRF-TF 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1838 - - gmx:100816084 252.677