Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1836 ATGTTACCTCCCAACTTTGAGTTCCCAGTTTACGAGGCTTGGGTAGAAGAGGATGAAGAGATTCCCGATGAACTCCGATGGATGTTAGAGCAAGAAAGAAAAGCTATTCAGCCTTACAAGGAAGAAATAGAGTTGATCAACCTGGGCACTGAGGATGATAAAAAAGAAATTAAGATTGGAGCGTCGTTGGAGGCGTCTGTCAAGAAAAAGATAATTGAGCTTCTCAGAGAGTATGATGATATATTTGCATGGTCCTACAAAGACATGCCGGGGTTAGACCATGATGTTGTGGAACACCGTTTGCCTTTGAAGCCCGAGTGTCCTCCAGTCAAGCAGAAGTTAAGAAGATCTCATCCAGATATGGCTCTCAAGATCAAAGAGGAAGTGCGAAAGCAAATTGATGCAGGTTTCTTGATTACCTCTGAGTATCCTCAATGGTTGGCCAACATAGTGCCCGTTCCAAAGAAAGATGGTAAGGTCAGAATGTGTGTTGACTATCGGGATTTGAACAAAGCTAGTCCGAAGGATGATTTCCCTTTACCTCACATTGATGTATTGGTTGATAGTACTGCTAGATGCAAGGTATTCTCCTTCATGGATGGATTCTCCGGGTATAACCAGATCAAGATGGCTCCAGAAGATAGAGAAAAGACGTCGTTCATCACGCCTTGGGGTGCTTTCTGCTACTTGGTAATGCCATTTGGGTTGATAAATGCTGGTGCCACTTACCAGAGAGGCATGACTAAAATATTCCATGATATGATACATAAAGAGATTGAAGTGTATGTGGATGACATGATTGTCAAATCAGGCACTGAAGAAGAACATGTTGAATCCGGCAAGCTCTTGGGTTTTATCGTCAGCCAGAAGGGTATTGAAGTAGATCCCGACAAAGTCAAAGCTATCAGGGAAATGCCTGCTCCAAGGACAGAGAAACAAGTTAGAGGTTTTCTAGGAAGACTGAACTACATCTCCAGATTCATCTCTCATATGACTGCCACATGTGGGCCGATATTCAAGTTACTCCGTAAAGATCAAGGGATTGTTTGGACGGAAGATTGCCAGAAAGCTTTTGACAGCATCAAAGGGTATTTGTTAGAACCTCCGATTCTTGTCCCTCCGGTCGAAGGGAGGCCTTTGATCATGTATTTGACTGTGTTAGAAGATTCTATGGGCTGTGTGTTGGGTCAACAAGACGAGACTGGAAAGAAAGAGCACGCCATTTACTACTTGAGTAAGAAGTTTACCGATTGTGAGTCCCGATATTCTATGCTTGAGAAAACCTGTTGCGCTTTGGCATGGGCTGCTAAGCGTCTTCGTCACTATATGGTTAATCACACTACTTGGTTGATATCCAAAATGGATCCGATCAAGTACATTTTTGAGAAGCCGGCTTTAACAGGAAGAATTGCTCGTTGGCAGATGTTATTGTCCGAGTATGATATTGTCTACCGCACTCAGAAAGCCATCAAAGGTAGTATTCTGGCTGACCATTTAGCTCATCAACCAATTGAAGATTATCAGCCTATCAAGTTTGATTTTCCAGATGAAGAGATCATGTATTTAAAGATGAAAGATTGTGACGAACCGTTGTTTGGTGAAGGTCCTGATCCAGACTCCAAGTGGGGTTTGATATTTGATGGGGCGGTTAATGTCTATGGTAATGGAATAGGGGCAGTTATCCTTACTCCAAAGGGTACTCACATTCCTTTCACTGCAAGACTCCGGTTTGATTGTACGAACAACATTGCAGAATATGAAGCTTGCATCATGGGTATTGAAGAAGCCATTGACTTGAGGATTAAAAATATTGACATATACGGAGATTCTGCTCTTGTGATTAACCAGATCAAAGGAAAATGGGAGACTCATCATGATGGTTTGGTACCGTACAGAGACTATGCAAGACGTCTTTTGACTTTCTTCAACAAGGTGGAACTGCACCACATTCCTCGGGATGAGAATCAAATGGCGGATGCCCTAGCTACTTTATCTTCAATGATCAAAGTGAATCATGGCAACGACGTGCCGCTGATCAGTGTCAAATTCCTTGATAGGCCTGCTTATGTGTTTGCAGCCGAAGCAGTTTTCGATGATAAGCCGTGGTTTCATGATATTAAAGTGTTTCTTCAAACTCAAGAGTACCCTCCTGGGGCATCCCGTAAAGATAAGAGAACCTTAAGAAGATTGTCTGGTAACTTCTTTCTAAGTGGAGATGTTTTGTACAAAAGGAACTTTGATTCAGTTTTACTCAGATGTGTGGACCGACGAGAAGCAGATTTGTTAATGCATGAGATACATGAAGGATCATTTGGGACCCATTCTAGTGGATATTCAATGGCTAAGAAAGCATTGAGAGCAGGCTACTACTGGATAACGATGCATGCTGACTGCCATCACTATGCTAAGAAATGTCACAAATGCCAGATTTATGCGGACAAGATTCATGTGCCGCCGTCTATGCTCAATGTTATCTCATCTCCGTGGCCGTTCTCTATGTGGGGCATTGATATGATTGGTCGGATCGAACCAAAAGCTTCCAATGGACATCGATTCATACTAGTGGCCATTGACTACTTCACCAAGTGGGTTGAAGCGGCTTCTTATGCCAATAAGATGGTAGTCACCTATAAGGACTGGCATGAGATGTTACCCTATGCTCTATATGGTTACCGTACTTCAGTGCGTACTTCAACAGGGGCAACCCCTTTTTCCTTGGTGTATGGTACGGAAGCGATACTTCCCGTAGAAGTTGAAATCCCGTCTTTGAGAGTCTTGATGGAAGCTGAGTTATCAGAGGCTGAATGGTGTCAGAATAGGTACGATCAGTTGAATTTGATTGAGGAAAAGCGCATGGCTGCTTTGTGTCATGGACAACTATATCAGACCAGGATGAAACAAGCATTTGATAAGAAGGTTCGTCCCCGTGAATTTAAAGAAGGAGACCTAGTGGTCAAGAGTATCAAGTCTTTTCAACCAGACCCCAGGGGCAAGTGGACACCTAATTATGAAGGTCCCTATGTGGTGAAGAGAGCCTTCTCTGGTGGACCAGAGGTCTGGCCTTCCCCATTGGAGGTTCAAAGGATTATCACAAAGTTCAAAAATTATTCAGAATACGAGCAAGGAAAGAAAAAGTTGAACCAAGAGAGCTATTTGATGGATAGGATTATGAAGTCAAAAGAGAAATTGGGGAAAGTGCAGAGAACCAATTGGGAGATGGAGAAGTCCTTGATCTTGTTTCAATGTCTCGTTCAAGAAAATTTTATCAACACTCTGAACACAAACGTTTTGAATGATCTAGCAAGTGAAATTAATGAGAAGCTTAAGGAAATTACTTCAAAGATGAATCAACTTGACACAAATGAAACCACTTAG 3375 0.4246 MLPPNFEFPVYEAWVEEDEEIPDELRWMLEQERKAIQPYKEEIELINLGTEDDKKEIKIGASLEASVKKKIIELLREYDDIFAWSYKDMPGLDHDVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLITSEYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTARCKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGAFCYLVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVESGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKDQGIVWTEDCQKAFDSIKGYLLEPPILVPPVEGRPLIMYLTVLEDSMGCVLGQQDETGKKEHAIYYLSKKFTDCESRYSMLEKTCCALAWAAKRLRHYMVNHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSILADHLAHQPIEDYQPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSKWGLIFDGAVNVYGNGIGAVILTPKGTHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIDIYGDSALVINQIKGKWETHHDGLVPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKVNHGNDVPLISVKFLDRPAYVFAAEAVFDDKPWFHDIKVFLQTQEYPPGASRKDKRTLRRLSGNFFLSGDVLYKRNFDSVLLRCVDRREADLLMHEIHEGSFGTHSSGYSMAKKALRAGYYWITMHADCHHYAKKCHKCQIYADKIHVPPSMLNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANKMVVTYKDWHEMLPYALYGYRTSVRTSTGATPFSLVYGTEAILPVEVEIPSLRVLMEAELSEAEWCQNRYDQLNLIEEKRMAALCHGQLYQTRMKQAFDKKVRPREFKEGDLVVKSIKSFQPDPRGKWTPNYEGPYVVKRAFSGGPEVWPSPLEVQRIITKFKNYSEYEQGKKKLNQESYLMDRIMKSKEKLGKVQRTNWEMEKSLILFQCLVQENFINTLNTNVLNDLASEINEKLKEITSKMNQLDTNETT* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1836 1124 CDD RNase_HI_RT_Ty3 391 499 - -
Mtr3g1836 1124 Coils Coil 1097 1121 - -
Mtr3g1836 1124 Gene3D - 178 301 IPR043128 -
Mtr3g1836 1124 Gene3D - 544 679 IPR036397 GO:0003676
Mtr3g1836 1124 SUPERFAMILY DNA/RNA polymerases 94 480 IPR043502 -
Mtr3g1836 1124 Pfam Integrase zinc binding domain 755 811 IPR041588 -
Mtr3g1836 1124 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 153 302 IPR000477 -
Mtr3g1836 1124 Gene3D - 720 811 - -
Mtr3g1836 1124 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 97 238 - -
Mtr3g1836 1124 SUPERFAMILY Ribonuclease H-like 828 917 IPR012337 -
Mtr3g1836 1124 CDD RT_LTR 136 287 - -
Mtr3g1836 1124 PANTHER RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEIN 16 269 - -
Mtr3g1836 1124 PANTHER RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEIN 285 850 - -
Mtr3g1836 1124 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 16 269 - -
Mtr3g1836 1124 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 285 850 - -
Mtr3g1836 1124 Pfam Reverse transcriptase-like 554 663 IPR002156 GO:0003676|GO:0004523
Mtr3g1836 1124 ProSiteProfiles RNase H type-1 domain profile. 538 667 IPR002156 GO:0003676|GO:0004523
Mtr3g1836 1124 Pfam RNase H-like domain found in reverse transcriptase 378 480 IPR041373 -
Mtr3g1836 1124 SUPERFAMILY Ribonuclease H-like 545 667 IPR012337 -
Mtr3g1836 1124 CDD RNase_HI_like 542 664 - -
Mtr3g1836 1124 Gene3D - 302 377 IPR043128 -
Mtr3g1836 1124 Gene3D - 821 872 IPR036397 GO:0003676
Mtr3g1836 1124 Gene3D - 873 952 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1836 Mtr-Chr3 31002963 31013462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1836 1008 1121 MADS-box Gene Family AT5G26630 30.702 3.64e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1836 - - gmx:102660916 1578.92