Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1833 ATGAGAAAGAAGGTGAAACTTGCATTCATGGTCAGTGATTCCGCAAGGAAGATAACTTACAACAAAAGAAAAACGAGTTTGATCAAGAAGGTTAATGAACTCACCACCCTATGTGGGATTGATGGATGCGCTATAGTTTATAGCGAATTTCATTCAGAGCCTGAGGTTTGGCCTTCTCCATGGGAGGTCCAAAAGGTTCTCACAAAGTTCAAAAGTTATTCAGAATTCGAGCAAGGAAAGAAGAAGCTGAACCAAGAGAGCTATTTGAGGGAGAGGATTATGAAGTCCAAAGAGCAATTGATGAAATTGGAGAAGAACAATTGGGAGACGGAGAAGTCCTTGATCTTGTTTCAATGTCTTGTCAAAGAAGATTTTGTCGACACTTTGAACTCAAATGTTTTGAATGATCTAGCATGGGAAATTAATGAGAAGCTGAAGGAAATTACCTCAAAGGCCAATGAACTAGACACAAGTGCAACCAATTAG 486 0.393 MRKKVKLAFMVSDSARKITYNKRKTSLIKKVNELTTLCGIDGCAIVYSEFHSEPEVWPSPWEVQKVLTKFKSYSEFEQGKKKLNQESYLRERIMKSKEQLMKLEKNNWETEKSLILFQCLVKEDFVDTLNSNVLNDLAWEINEKLKEITSKANELDTSATN* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1833 161 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr3g1833 161 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mtr3g1833 161 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 158 - -
Mtr3g1833 161 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Mtr3g1833 161 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 2 158 - -
Mtr3g1833 161 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Mtr3g1833 161 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Mtr3g1833 161 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Mtr3g1833 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Mtr3g1833 161 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1833 Mtr-Chr3 30973113 30973598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1833 2 160 Type I MADS-box Gene Family AT5G48670 45.283 2.34e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g1833 SRF-TF 4.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1833 - - mtr:MTR_3g466830 323.939