Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1807 ATGATGTTGAAAATGCTTGTTGACAGCATATCCTCATTTTTGCATTCATCATTTTCTGGAAACATGAACTCAGAAACAGTCTCAAAATATTACCAGAAGACTGAAGTGATACTTAAGTTGTTGAAGCCGATCATTGATACTTTTGCTAATTCCGAGCCAACGTCCGATGAAGTGCTCAGTATGACATTCGAAGAACTTGGTCATGCTGTTGATGAAGTAAAGGAGTATGTTGAGAATTGGCACCTATTGTCTAGCAAAGTTTATTTTGTTATGCAAGTTGATCCCTTGATATCTAGGATTTGGACTTCAAGTCTCAAGGTCTTGCAGCAGCTGAAGGCTTCAAAACAATTTCCGAATGATGAAGTCAATTCTGAACATTTGGAGCACTGTGTTCAGAAACTTAAGCTTTTGGGACTTGAAGAAACCTCATCTGTAATTAAGGAAGCTATTATGGAACAACTAGATGATGCAGGGCCCAGTTCAGAGGTCCTGGAAAAAATTGCTGATAGCCTGGGCCTAAAATCTAACGAGGAGGTTCTGATTGAGGCTGTGGCCCTAGAAAAGTTGAAGGAGAATGCTGAACAGACTGAAAAGACGGCAGAAGCTGAATACATTGATCAAATGATTGCTGTTGTAACTCGTATGCATGAGCGCCTTGTTCTGCTTAAGCAATCTCAGAGTAACAGTCCAGTTCCAGTACCCCCTGACTTTTGTTGTCCACTTTCTTTGGAGTTGATGACTGATCCAGTGATCGTTGCCTCAGGGCAAACCTATGAGCGGGCGTTTATCAAAAACTGGATTGATCTTGGTCTTACTGTTTGTCCAAAGACACATCAGACTTTGGCGCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCTGGTTGATCCTATAAAGTCCACAACCTTAAACCAAGCGTCTATCCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCTCCTGTTTTCCCTCATTCCAGGAGCAATCTGCCATCCTCACCGGAGTCGGCTCGATCTCGTTCTTTTAATTCACCAGGTAATAACATACCTTCTTCTGGTGGTATCCAGCGAGAGGGAACATCACCTTTGCACCCGCGTTCAATTTCAGAAGGTTCCTTGAGTGGCATAGTTAATGGGCAGTATATGGATGCTGCTAGAACATCACCCACAGGTATAGATGATAGGTCTGCTAGTTCAGATGAAAGCAGTATAGATTCAATGGGCCAACCATCAATATCACCATCTAGAAGGGAATCTTCTGGTGCCTTCAGCTCCGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTTTCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAGCTGTCAACAAGTCCAGGCTACAGTAGAGATACTTCTGGCGAATTAAATCCAGTATCAGATGCTTCTGGTTCTGCTCCCATGCCATCTATGCAGAGAGAACCTGAGTTCCCACCCCGATTGATGGAGGCAAGGTCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTTGTTCCTAGGATAATATCTTCTTCTGCTATTGAACCAAGAGTTGATCTTTCTGGTATTGAGGCACAGGTTCGGAGTTTAGTCGAGGGCTTGAGGAGTATTGATCTCGATATTCAGAGAGAGGCAACTTCAGAAATCCGCCTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAACATATTAGTTGACTTACTTCAATCAGCTGATTCAAGGGTCCAGGAAAATGCTGTTACAGCACTTCTCAACTTATCAATCAATGACAACAACAAAACTGCAATTGCAAATGCCGGTGCAATTGAACCTCTGATACATGTTCTTGAGCACGGGAGCCCAGAAGCCAAGGAGAATTCAGCGGCCACTCTTTTCAGCTTGTCCGTGATTGAGGAAAACAAGGTTAACATAGGGAGGTCTGGGGCAATTAGGCCACTTGTAGATTTATTAGGGAATGGAACTCCAAGGGGAAAAAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCACGAGAACAAGAATCGGATTGTGCAAGCTGGTGCCGTGAAGCACCTCGTGGAGTTGATGGACCCAGCGGCAGGAATGGTTGACAAGGCTGTTGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAATTGCAATTGGTCAGGAAGGTGGGATTCCTGTCCTAGTGGAGGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTTTGCTTACACAGTAATAGATTCTTAAGCATGGTGCTACAACACGGAGCCGTACCACCATTAGTAGCTTTGTCACAGTCAGGCACACCAAGGGCCAAAGAAAAGGCCCAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGGAATTCTGGGAGGGGCTGA 2511 0.4365 MMLKMLVDSISSFLHSSFSGNMNSETVSKYYQKTEVILKLLKPIIDTFANSEPTSDEVLSMTFEELGHAVDEVKEYVENWHLLSSKVYFVMQVDPLISRIWTSSLKVLQQLKASKQFPNDEVNSEHLEHCVQKLKLLGLEETSSVIKEAIMEQLDDAGPSSEVLEKIADSLGLKSNEEVLIEAVALEKLKENAEQTEKTAEAEYIDQMIAVVTRMHERLVLLKQSQSNSPVPVPPDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLVDPIKSTTLNQASILHGYMESGTTRESPVFPHSRSNLPSSPESARSRSFNSPGNNIPSSGGIQREGTSPLHPRSISEGSLSGIVNGQYMDAARTSPTGIDDRSASSDESSIDSMGQPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANFQETQGDDSNASQLSTSPGYSRDTSGELNPVSDASGSAPMPSMQREPEFPPRLMEARSRSQAIWRRPSERLVPRIISSSAIEPRVDLSGIEAQVRSLVEGLRSIDLDIQREATSEIRLLAKHNMDNRIAIANCGAINILVDLLQSADSRVQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLEHGSPEAKENSAATLFSLSVIEENKVNIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1807 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 716 757 IPR000225 GO:0005515
Mtr3g1807 836 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 832 - -
Mtr3g1807 836 SUPERFAMILY ARM repeat 553 825 IPR016024 -
Mtr3g1807 836 SMART Ubox_2 236 299 IPR003613 GO:0004842|GO:0016567
Mtr3g1807 836 Pfam Armadillo/beta-catenin-like repeat 623 662 IPR000225 GO:0005515
Mtr3g1807 836 Pfam Armadillo/beta-catenin-like repeat 584 621 IPR000225 GO:0005515
Mtr3g1807 836 Pfam Armadillo/beta-catenin-like repeat 666 703 IPR000225 GO:0005515
Mtr3g1807 836 Gene3D - 536 831 IPR011989 -
Mtr3g1807 836 Pfam U-box domain 233 303 IPR003613 GO:0004842|GO:0016567
Mtr3g1807 836 MobiDBLite consensus disorder prediction 399 443 - -
Mtr3g1807 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 593 635 IPR000225 GO:0005515
Mtr3g1807 836 MobiDBLite consensus disorder prediction 330 387 - -
Mtr3g1807 836 ProSiteProfiles U-box domain profile. 232 306 IPR003613 GO:0004842|GO:0016567
Mtr3g1807 836 MobiDBLite consensus disorder prediction 457 498 - -
Mtr3g1807 836 Coils Coil 176 206 - -
Mtr3g1807 836 MobiDBLite consensus disorder prediction 457 513 - -
Mtr3g1807 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 675 717 IPR000225 GO:0005515
Mtr3g1807 836 PANTHER U BOX DOMAIN-CONTAINING 7 832 - -
Mtr3g1807 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 307 IPR013083 -
Mtr3g1807 836 SUPERFAMILY RING/U-box 222 310 - -
Mtr3g1807 836 SMART arm_5 745 785 IPR000225 GO:0005515
Mtr3g1807 836 SMART arm_5 582 622 IPR000225 GO:0005515
Mtr3g1807 836 SMART arm_5 664 704 IPR000225 GO:0005515
Mtr3g1807 836 SMART arm_5 705 744 IPR000225 GO:0005515
Mtr3g1807 836 SMART arm_5 623 663 IPR000225 GO:0005515
Mtr3g1807 836 SMART arm_5 536 580 IPR000225 GO:0005515
Mtr3g1807 836 CDD RING-Ubox_PUB 237 279 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1807 Mtr-Chr3 30527597 30533475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1807 193 836 U-box Gene Family AT2G23140 61.196 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1807 - - gmx:100811250 1282.7