Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1787 ATGGGCAGAAGAAAGGTGGAAATCGCATACATAACCAATAACTCAAATCGGAGGTTAACATTCAGAAGAAGAAAAAATGGTATAATGAAGATGATCAAGGAATTGAGCATCCTTTGTGGTATAGAGGCTTGTGCAATCATTTCTGATGAAAACCATCATGAAGCTGAGGTTTGGCCTTCTCCAACTGAAGTAGTAAATGTGTTGTCAAGGTTCAAGAATTTGTCCGAACATGAACAAGGAAAAAGGATGCTGGATTTAGAGAGCTACTTGAAACAAAGAATTGAGAAAACCCAAGATCAGTATCACAAGCTAAAGATGGAAAACAAGAAGAAAGAAATGGCTGGATATATAGAGAAATATATGTGTACCAAAGAATTTAATTTTGGTGATGCTCACTTGACCAATCCTAATGATTTTACGGACTTTATTAACGAGCAATTGAAGGAAGTCAAGCAAAAGTTAGATTCAATGGATTTCCAAGCTCAAGAGGATTCAATTGATTTTGATGATATTGATTTCGATCCAAATGAATTTTATCTAGCTACTCCATAA 552 0.3514 MGRRKVEIAYITNNSNRRLTFRRRKNGIMKMIKELSILCGIEACAIISDENHHEAEVWPSPTEVVNVLSRFKNLSEHEQGKRMLDLESYLKQRIEKTQDQYHKLKMENKKKEMAGYIEKYMCTKEFNFGDAHLTNPNDFTDFINEQLKEVKQKLDSMDFQAQEDSIDFDDIDFDPNEFYLATP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1787 183 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Mtr3g1787 183 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr3g1787 183 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 161 - -
Mtr3g1787 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mtr3g1787 183 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mtr3g1787 183 Coils Coil 94 114 - -
Mtr3g1787 183 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mtr3g1787 183 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr3g1787 183 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr3g1787 183 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr3g1787 183 PANTHER MADS BOX PROTEIN 3 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1787 Mtr-Chr3 30276791 30278462 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1787 1 150 Type I MADS-box Gene Family AT3G05860 39.474 2.17e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g1787 SRF-TF 3.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1787 - - mtr:MTR_3g031240 367.081