Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1778 ATGAAGAAGGCTAATGAATTGAGCACCCTTTGTGGGGTAGAGGTATGTGCAATAATCTATGGTGAAAACCATGGTCAAGCAGAAGTTTGGCCATCCGCGATAGGACTAGAACGTGTGTTGCACAAGTTTGAGAATTTGTCTGAACTCAAAAGAAACAAAAATATGGTGGATCTATATAGCTTTTGGATGCAAAGGATTGAAAAAGCCAAAGAGAAGTATGAGAAAGCAATGATGGAAAACAAGAAGGCGGAAATGACTAATTTTATACGTCAATTTATTCATACTCGTAACTATAATATTGGTGATCTGAGCTTAAATGATATCAATTATCTGACGACTTTAATTAATGACAATATGAAGGAAGTCGATCAGAGGTTGGATTCAATGGTAACCCAAGCCGATGAGCAGGTTGTAAATGGAGCTGAAGCTATAAAGGATGGAGATTTGTTGGCTAGTACAAACATTGCTCAAGTGCCGTTGAGTGGAGGAGATACGCTGAATAACATGGATGAGGTTGTTGATACCCATGGTTATGAGACTAACATGAATTATGGTTTGCAAAGTGATGAGCAACTACCTATGGACTTCCTCATGCCACCATTTGATGATTTTGATTTTGATTTCGACCCAAATGGATTTGGATCTATCTAG 651 0.3825 MKKANELSTLCGVEVCAIIYGENHGQAEVWPSAIGLERVLHKFENLSELKRNKNMVDLYSFWMQRIEKAKEKYEKAMMENKKAEMTNFIRQFIHTRNYNIGDLSLNDINYLTTLINDNMKEVDQRLDSMVTQADEQVVNGAEAIKDGDLLASTNIAQVPLSGGDTLNNMDEVVDTHGYETNMNYGLQSDEQLPMDFLMPPFDDFDFDFDPNGFGSI* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1778 216 CDD MADS_SRF_like 1 57 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr3g1778 216 Gene3D - 1 97 IPR036879 GO:0003677|GO:0046983
Mtr3g1778 216 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 151 - -
Mtr3g1778 216 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
Mtr3g1778 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 151 - -
Mtr3g1778 216 ProSiteProfiles MADS-box domain profile. 1 23 IPR002100 GO:0003677|GO:0046983
Mtr3g1778 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 23 IPR002100 GO:0003677|GO:0046983
Mtr3g1778 216 Coils Coil 59 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1778 Mtr-Chr3 30200225 30200875 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1778 5 127 Type I MADS-box Gene Family AT5G48670 38.211 9.78e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g1778 SRF-TF 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1778 - - mtr:MTR_3g031100 385.956