Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1757 ATGGGATCAGGTTCCTCACCTTGTGCTTCTTGCAAATTGTTGAGAAGACGTTGCACACAGGAATGTATCTTTGCCCCTTACTTTCCTTCTGATGACCCACGCAAGTTTTCCATTGTTCATAAGGTTTTTGGTGCTAGCAATATCAGCAAAATGCTGCAGGAGCTTCCAATTCATCAAAGATCAGAAGCAGTGAACAGTTTAGTTTTTGAAGCAAATGCAAGAGTGAGAGATCCTGTTTATGGATGTGTTGGAGCCATATCATACCTTCAAAGTCAAGTTTCACAATTACAAATGCAACTTGCAATGGCTCAATCAGAGATTCTTTGCATCCAGATGCAACAAGAATCTACTACGGTTACCAACTCATTACCAACACATGTTGATGATCAAGATGACAAATTGATGATACTATCTGAAAGTAGTAATTGCTATGGAGTTCTTCCACAATATATTAACTTTCCTTCTTCTTCTTCCTCATCTTCCAATGTATTCCAAGATTATGAGCCTCTTAAGAGAGAGACTTTTTGGAATTAA 534 0.382 MGSGSSPCASCKLLRRRCTQECIFAPYFPSDDPRKFSIVHKVFGASNISKMLQELPIHQRSEAVNSLVFEANARVRDPVYGCVGAISYLQSQVSQLQMQLAMAQSEILCIQMQQESTTVTNSLPTHVDDQDDKLMILSESSNCYGVLPQYINFPSSSSSSSNVFQDYEPLKRETFWN* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1757 177 Coils Coil 86 106 - -
Mtr3g1757 177 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Mtr3g1757 177 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 1 174 - -
Mtr3g1757 177 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Mtr3g1757 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1757 Mtr-Chr3 29962394 29964128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1757 2 176 AS2 family AT2G30130 61.257 1.64e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr3g1757 LOB 1.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1757 - - gmx:100780073 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1757 3 29962394 29964128 Mtr3g1757 3 29962394 29964128 ECH