Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1735 ATGGCTAGAAATAAGGTGAAACTAGCATACATAACAGGTGATTCGAAGAGGAGGATAACATTCAGAAAGAGGAAAAATGGAATTATGAAGAAGATTAATGAAATTAGCACCCTATGTGGAGTCGAAGCATGTGCAATAATTTCAGAGCAAAACAACCCTCGAGTAGAAGTTTGGCCATCAGATTCAGGGGTCAGAAGTGTGATATCTAGGTTTAGGAGTTTGCCTGGATATGAACAATGTAAAAAGATGGTGGATCAGGAGGTCTTCTTGAAGCAAAGCATTGGGAAAGTCTACGAGCAGTTGAAGAAGCAAAGGGAGGAAACCAGAAAGATGGAAATGACCAATATCATTGATCATTATATTCAAACCATAGAATTTAATGGAAATTCGATGAGCAAATCTGATCTCAATGATTTTTCATCTTTTATTGATGAGAATTTGAAGGAGGTTAATCTGAAGATGAAAGAAATGACAATCAAAGATCAAAAGGAGGTTGGAAATGGGGTGGGATTATGA 516 0.3702 MARNKVKLAYITGDSKRRITFRKRKNGIMKKINEISTLCGVEACAIISEQNNPRVEVWPSDSGVRSVISRFRSLPGYEQCKKMVDQEVFLKQSIGKVYEQLKKQREETRKMEMTNIIDHYIQTIEFNGNSMSKSDLNDFSSFIDENLKEVNLKMKEMTIKDQKEVGNGVGL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1735 171 PANTHER MADS BOX PROTEIN 3 159 - -
Mtr3g1735 171 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 159 - -
Mtr3g1735 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr3g1735 171 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Mtr3g1735 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr3g1735 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr3g1735 171 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr3g1735 171 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mtr3g1735 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mtr3g1735 171 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr3g1735 171 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1735 Mtr-Chr3 29755343 29756366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1735 1 155 Type I MADS-box Gene Family AT5G48670 51.592 4.06e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g1735 SRF-TF 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1735 - - mtr:MTR_3g465410 286.574