Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1712 ATGGAGGGTTTCGAGACTTCATCAAACTCGCAATCAAAGCTGAAAATCAATGAAAGGGTTGAGGTGAAGAGTTTTGAAGAGGGGTTTCTGGGATCATGGCATCCAGGGACAGTTATTGATAGTGAGAAGCTGAAGCGTCATGTTCAATATGAGAATATTCTGAATGATAATGGATTGGGTAATTTTGTGGAGATAGTGAGTGTTTCAAGTGTTTTGGATGGTGATATTGGGTCATTGAGTAAACGTGGGAGGATCAGGCCAGTGCCTCCTTTGGTTGAGTTTGAGAAATGTGATCTTAAGTATGGTTTGTGTGTTGATGTAAATTACCAGGAAGCTTGGTGGGAAGGTGTTGTAAATGATAAGTGTGATGGAATGGAGGAGAGGACTGTGTTTTTCCCTGATTTGGGTGATGAAATGAAGGTCGGAATTCAGGAAATGCGGATTACTCAGGATTGGGATGAAGTTACGGAGAAGTGGGAGCCACGAGGGAAATGGTTGCTTTTTGAATTGATTGAGGAATCGTATCTTCCAGTCTCGGTAAGGCAAATTTGGTATGATGTGCGACAAAAAAAGGAATTTTCCGCGATTGGTGAATGGACATTGATTGAGAAGAAGGATTTGTGGAGACACTTGATAATGGAGGTAGTTGGTGACTACTTGGCTGTTACAGTAAAGGAAGTTTTCTCGGCCTTGAAACTTCCGGAGATGGAATCAGGTGAACTATTATCTGAAAAGGAAAAGTTTGAGCAGAAAGAACCTGTTGTTCCTCCGGCTGGAAAGGACTTGCCTAAGTTTCAAAATGAAGTTTCATGCAACGGTGCTGGTGAAGCGGTTGCCATCAATTTTGAGAAAAATGAACACAGATTGTCAACTGATTTAAAGTCAAATAATCAGTGGGAAAGTGTAATATTTTCTGAAACTGAATACTGTCCCGATGCTGTTAAGCAATATGTGCTTGCTTCTGACGACAGGGCAACTATGACATCTTTGAAGGAAAAAGTATGGAAACATCTTGCATATATTGGATGGGAAATTGACATTAGCCTGCGTAATAAACATTACAGGTACACGCCACCCAATGGAATCCATTGCAATAAGAAAGTTTACTACTCACTTACTTTACTTTGTAAAGCTGAATCCATGATGAACTCTTCTCCATCCGAAAATGGTCTTGGTATAAGTCATCCTGCCGGTGACTGTCACGTTCCAAATGTGCCTCTTAGTCCATCTGAAAAGATTCAGAACCAAGTATCTCCTCTAGTTTTGGGGCTTCCATCTGTTGCAGTGGCAGATGAACAAGCTTATTGTCCTCAAGCCATTGTGGAATACCACAAACATGCACTCAAGAAGACCTGCAATCCGGCAGATAAAAGGAAACTTATTTCAAAAGTAAGAAATCATCTGAAAGCAGAAGGATGGATTTTAATCGATCCACCTCCAAATAATAGAAGAAGAGGTGTTTTATACATTTCTCCACAGAAACAGAGATTCTTCTCATTGAATTCAGTATGCAGTTTCTTACTTAAAGAAAGTATTCAGAAATCGACTATTTCTTGCATGCAACCTTTAAATATCTCAACCATTCATGAGGAAAATGTTGATCAGGTATTGAGTGATGATTTATCAAGTAGAGACAGTGTTGCTGCGAATAAATCAAGTGCAAATCGGAAGCGAAAACGCTTGAGGAATTCAGATGGCAGCCTGCCAAAGCGCCGAAGCAATGAATCAACTCTAAGGGTGCTGAGATCAAATGAAAGGGTGCCAAACGCGTCTTCCTCTTGCCTTTCACATCATAAACCTTTAAATGTTCTGTCTTGGTTGATAGACAGCAACACGTTGTTACCAAGGTCTAAGGTTTTTTGTCGAGCAAAACGTGGGCACCGTACTGTGCTTTCTGGGCGAATAAGTCATGAAGGCATCAAGTGTAACTGTTGTTCAAGAATATACAGTCTTGTTTCCTTCGAATTTCATGCTACTGGCAGTAATACCATCAGACCAAGTGCCAGTATCTTTCTGGACGATGGTAGGTCACTCTTATCTTGCCAGATTCAAATAATGCAAGATCACAAGTCTAAGGAGGCTATGATAAAACCACACAGTCATTTGTGTCAAGGTGAAAACGACTACATTTGTTCTGTTTGCCACTTTGGGGGCGAACTTCTTTTGTGTGATCACTGTCCGTCTTCATATCATAAGACATGTCTTGGTCTGGAGGATCTCCCTGATGGTGAATGGTTTTGTCCATCGTGTCGATGTGGGATTTGTATCCAAAGCAAATTCAACGGGGGTGGTGAGGATGAACATTTCCTTACATGCATTCAGTGTGAACATAAATATCATGTTGCGTGCCTGAAAAGTAGAGATACCAGTAAATCCGGAAGTTATTTGGAAAGCCGGTTCTGCGGAAAAGACTGTGAAAAGTTATATGCAGCCCTTCAAAGTATGTTAGGACAACCAGTTTCAGTGGGTGCGGACAATCTAACATGGACATTAGTGAAGTGTGCCGACTCTGAGAGTTGTGAACTTGATAATAGTAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAATGTCGCTCTTTCATTGATGCATGAATGTTTTGAGCCCTTAAAGGAATCCTCTTCTTGCAGAGATCTGATGGAAAATGTTTTATTCAGCCGATGGTCAGAACTTAATCGAATGAATTTCCGGGGTTTCTATTCCGTACTTCTGGAAAGAAATGAAGATCTTGTCAGTGTAGCAACTATTAGGGTCCTTGGAGATAAGGTAGCTGAAGTACCTCTTGTTGGTACCAGATTTCAGTATCGTCGTCATGGAATGTGTCGCATATTAATGGATGAACTGGAAAAGACGCTCACGCAATTAGGAGTGGAGCGTCTCATTTTACCTGCTGTTCCCACTGTGGTAGATACATGGACCGGCGCTTTTGGATTTTCAAAGATGCCAAACTTTGAAAGATCACAATTTCTAAACTATACTTTCCTAGATTTTCCGGGTACCATCATGTGCCAGAAGTTTTTAGCAAATATTCCGTCTCCAAATTCGGTTTTGCCAACTGAGTTCCAACGAAAACAAGATGCTATCTCCGGAAGCAGTAGTGCTAGTAATAAGTCTCCAGTTTCTGAAGTTTACCAAGCAGAAGAGATAGACAAAAGAGAATCGTTGGATCAACAAATGATGGATACTTCTGAAGGCGATAATGATAATCTTGGCAGTGCTGTTATTGACTGTGTCACCATGGTGGAGCAACCAATTCCTGAGGATCAACAACATTGCCAGAATGGAACCACTCAAGAGTGCTCTTTTGTAAGGTGGCGTGGACTGGTCTACTCTAGACGAAGGAAGGCGAAAGGGGAAAATGGAGCGTAG 3372 0.4122 MEGFETSSNSQSKLKINERVEVKSFEEGFLGSWHPGTVIDSEKLKRHVQYENILNDNGLGNFVEIVSVSSVLDGDIGSLSKRGRIRPVPPLVEFEKCDLKYGLCVDVNYQEAWWEGVVNDKCDGMEERTVFFPDLGDEMKVGIQEMRITQDWDEVTEKWEPRGKWLLFELIEESYLPVSVRQIWYDVRQKKEFSAIGEWTLIEKKDLWRHLIMEVVGDYLAVTVKEVFSALKLPEMESGELLSEKEKFEQKEPVVPPAGKDLPKFQNEVSCNGAGEAVAINFEKNEHRLSTDLKSNNQWESVIFSETEYCPDAVKQYVLASDDRATMTSLKEKVWKHLAYIGWEIDISLRNKHYRYTPPNGIHCNKKVYYSLTLLCKAESMMNSSPSENGLGISHPAGDCHVPNVPLSPSEKIQNQVSPLVLGLPSVAVADEQAYCPQAIVEYHKHALKKTCNPADKRKLISKVRNHLKAEGWILIDPPPNNRRRGVLYISPQKQRFFSLNSVCSFLLKESIQKSTISCMQPLNISTIHEENVDQVLSDDLSSRDSVAANKSSANRKRKRLRNSDGSLPKRRSNESTLRVLRSNERVPNASSSCLSHHKPLNVLSWLIDSNTLLPRSKVFCRAKRGHRTVLSGRISHEGIKCNCCSRIYSLVSFEFHATGSNTIRPSASIFLDDGRSLLSCQIQIMQDHKSKEAMIKPHSHLCQGENDYICSVCHFGGELLLCDHCPSSYHKTCLGLEDLPDGEWFCPSCRCGICIQSKFNGGGEDEHFLTCIQCEHKYHVACLKSRDTSKSGSYLESRFCGKDCEKLYAALQSMLGQPVSVGADNLTWTLVKCADSESCELDNSKSGLLAESYSKLNVALSLMHECFEPLKESSSCRDLMENVLFSRWSELNRMNFRGFYSVLLERNEDLVSVATIRVLGDKVAEVPLVGTRFQYRRHGMCRILMDELEKTLTQLGVERLILPAVPTVVDTWTGAFGFSKMPNFERSQFLNYTFLDFPGTIMCQKFLANIPSPNSVLPTEFQRKQDAISGSSSASNKSPVSEVYQAEEIDKRESLDQQMMDTSEGDNDNLGSAVIDCVTMVEQPIPEDQQHCQNGTTQECSFVRWRGLVYSRRRKAKGENGA* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1712 1123 SMART PHD_3 710 751 IPR001965 -
Mtr3g1712 1123 SMART PHD_3 752 806 IPR001965 -
Mtr3g1712 1123 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 877 986 IPR016181 -
Mtr3g1712 1123 SUPERFAMILY FYVE/PHD zinc finger 706 756 IPR011011 -
Mtr3g1712 1123 SMART agenet_At_2 12 71 IPR014002 -
Mtr3g1712 1123 SMART agenet_At_2 97 154 IPR014002 -
Mtr3g1712 1123 Pfam Tify domain binding domain 633 684 IPR032308 -
Mtr3g1712 1123 PANTHER PHD ZINC FINGER PROTEIN 13 244 - -
Mtr3g1712 1123 PANTHER PHD ZINC FINGER PROTEIN 314 1062 - -
Mtr3g1712 1123 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 847 1005 IPR000182 GO:0016407
Mtr3g1712 1123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 842 IPR013083 -
Mtr3g1712 1123 CDD NAT_SF 902 963 - -
Mtr3g1712 1123 Gene3D - 860 993 - -
Mtr3g1712 1123 MobiDBLite consensus disorder prediction 544 582 - -
Mtr3g1712 1123 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 314 1062 - -
Mtr3g1712 1123 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 13 244 - -
Mtr3g1712 1123 ProSiteProfiles Zinc finger PHD-type profile. 708 753 IPR019787 -
Mtr3g1712 1123 Pfam Agenet domain 18 90 IPR008395 -
Mtr3g1712 1123 CDD PHD2_CHD_II 711 750 - -
Mtr3g1712 1123 Pfam PHD-finger 710 752 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1712 Mtr-Chr3 29241153 29248187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1712 23 956 PHD Transcription Factor Family AT5G58610 36.128 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr3g1712 Agenet 2.1e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1712 - - cam:101498411 1541.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1712 3 29241153 29248187 Mtr3g1712 3 29241153 29248187 ECH
Mtr3g1712 3 29241153 29248187 Mtr5g2409 5 31584181 31590675 PCT