Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1696 ATGGAGGAGCAGCAACAAGATGATGAATTTATGATGTATAGATTCAAAGTGGAGCGTTGTTATGAAACTTCTTCTCATTATTTTAGTGAATGTTCCTTTGTTCATCCTGGGGAAAACTTAAAGCGCCGTGATCCGAAGCAATATAATTACAGTTATCTCCTTTGTCATGCATTTCAGAAATCTGGATCATGCTGGAAAGGGGATGCATGTGAATATGCACATGGTGCTTTTGAGTCCGGGCTGCATCCTAGTCGATACAGAACAATGTATTGCAGAAATGGAACTGAATGCAGAAGAGAAGTTTGCTTCTTTGCTCACAATCATGAGGAACTTCGCCCGTTGAATGCTACTACCAGTTCTGCTTTGCCTCCACCTACATTTTATTCAAATTCACCAAGTGCTTCTGCAATGGTTCCTTTCACATTGAGCTCTCCGTATGCTTTGATACAATCTTCATCAATGCCACCTTGGACACCGTCTGCAATATCATATCCTGCAGGAAGAACCATGTGGCCGACTCCGACTCAAATTCGTACTACAGTCCCTACACCTCAGATGCCGAGCAACAGCTTGAATGCTAGAGATAATACTCATCTGGACATGAAATTTTTCGAATATCACAATATGCCAAATCTAATGATGGAAGGGTCAAGTAGGCTTGCTGGAGTGAATCCTACTAACCTTGAAGGCTATTTTGGGTCATCGATACAATCTCCGACAGCAATGCAGGGGTATCAGAATGTGAACCAACAACTTCAGAGATATCCTTCTCAACTTACCAATTCTAATGTGGTTAGATCACAACAGTTCAGGTTTTATCCAATTTTGAATTCAAGATATGATGCCCTTTCGAAGCAGAGCCAGAACTTTATCGAGAGCAGCAGCATGGCGAGCTTTAATTCCATGCTTCCAGATGCTACCTCAGTTACATTGGAGCCTTCAACTTCCTTCTCTGGTTTGCGCTCTCGTGATAGAAAATTAGAATTGGGCGACACTAGCAACACTTCAACAATGGCTGCTGCATCAAATGTTGATGAGCCGGATGTAGGTTGGGTTGATGAACTTGTGGATTGA 1074 0.4227 MEEQQQDDEFMMYRFKVERCYETSSHYFSECSFVHPGENLKRRDPKQYNYSYLLCHAFQKSGSCWKGDACEYAHGAFESGLHPSRYRTMYCRNGTECRREVCFFAHNHEELRPLNATTSSALPPPTFYSNSPSASAMVPFTLSSPYALIQSSSMPPWTPSAISYPAGRTMWPTPTQIRTTVPTPQMPSNSLNARDNTHLDMKFFEYHNMPNLMMEGSSRLAGVNPTNLEGYFGSSIQSPTAMQGYQNVNQQLQRYPSQLTNSNVVRSQQFRFYPILNSRYDALSKQSQNFIESSSMASFNSMLPDATSVTLEPSTSFSGLRSRDRKLELGDTSNTSTMAAASNVDEPDVGWVDELVD* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1696 357 Gene3D - 51 113 - -
Mtr3g1696 357 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 8 356 - -
Mtr3g1696 357 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Mtr3g1696 357 SUPERFAMILY CCCH zinc finger 48 78 IPR036855 GO:0046872
Mtr3g1696 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Mtr3g1696 357 PANTHER UNKEMPT FAMILY MEMBER 8 356 IPR045234 -
Mtr3g1696 357 SMART c3hfinal6 51 76 IPR000571 GO:0046872
Mtr3g1696 357 SMART c3hfinal6 85 108 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1696 Mtr-Chr3 29054530 29055603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1696 8 308 C2H2 Transcription Factor Family AT5G12850 35.583 3.51e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g1696 zf-CCCH 9.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1696 - - mtr:MTR_3g464270 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1696 3 29054530 29055603 Mtr3g1696 3 29054530 29055603 ECH
Mtr5g2401 5 31433896 31437041 Mtr3g1696 3 29054530 29055603 ECH