Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1668 ATGGAAGAAGAATCATGCCACAAATCTCAAGCATCTGAGGAAGCTAAACATGAAGATTCAAATGAGAACCAACAAGAACAACTCAACACCAATCCTTATAGGGTCAACATTTCAATCACAAATTCATTTATGAATTTCATGTTGGATGATATTTGGTCTTGCATTGTTGTGCTAGTGGTGTTTTGGCTCATTGCATCTGTAACTCTGGTTGTTGGTGTCCATGGATCTGTTAATTTACAATTGGGACCTTACTCCTCAAGCTTGATAGAAATCAACTCAGTCTTAATACAATCTATCAAGGTGGAACAAAATAATAAGCCAAAACCTGGTTTAATGCTTTATGGATTTGATCTTCCTCCTCCACTAGATGTTAAAATAAATTGGACTGAAATGTATGATGCAAATATACCAGCAAAATCTCAAGAGGAATGGATATTCTACTTGAATAAAGGTTCCCAATTAAATGTTTTTTACAATGTTAAGTCCTTAGTTGCACCCTTATTCCTTGTAATTGCCAAAGGTAGAGAAAGCCTAATTAAGTGGAAAGAGGATCCATTATTCCCTAATGCAACATTGTATTGGAATAATATATATGGAAGTGGAAGTATCTCACAGAAAATATCATATTCATCTACTTACTATGTGGCTATTGGCAATATGAAACCTCAAAATGTAAAGGTAGAGTTGAAATTCATTGTAAATGCACTTCTCTACAATACAACTGGGTCTTATAAAAAATGTTCTCTGGATAATGGTTTATGTAGATTAAACCCTGCTCTTTCTGCAAACATAGCACTATTAACAACTCCTGGTCCTATTGAGGGTGCTTCAAAAAATGAATGGTTTGATGTAAATGTTTCTTATGAACCAAGATGGATCATATATTTTGCAGGATTAGGTGTGTTAATTGTGCAAATCTTATCCTCCATAAAATTCTACAAAACGTTCCTAACCAACAATGAAGAAAATGCAAGATTCGAACAAGTGGAAGTGATTTCAGAACGAGCTCCATTATTGTCTAGAAAAGATAGTGATAATTCAAGCTGGTGTTCATCTTATAATTCATTCTCCAGTGAAAATTCTGATGAAGGAAAGTCAATAATTGAAGGGGAAACAAGTAATCTTCAATGTTTATGTGTTATTTGCTTTGATGCCTCGAGAGATTGCTTTTTTCTTCCATGTGGCCATTTTGCAACATGCTATGCTTGTGGAACAAGAATTGCTGAAGAAACTTGCAGTTGTCCCATTTGCAGAAGGAAATTGAAGAAAGTAAGAAAAATTTATATTGTGTAG 1293 0.3426 MEEESCHKSQASEEAKHEDSNENQQEQLNTNPYRVNISITNSFMNFMLDDIWSCIVVLVVFWLIASVTLVVGVHGSVNLQLGPYSSSLIEINSVLIQSIKVEQNNKPKPGLMLYGFDLPPPLDVKINWTEMYDANIPAKSQEEWIFYLNKGSQLNVFYNVKSLVAPLFLVIAKGRESLIKWKEDPLFPNATLYWNNIYGSGSISQKISYSSTYYVAIGNMKPQNVKVELKFIVNALLYNTTGSYKKCSLDNGLCRLNPALSANIALLTTPGPIEGASKNEWFDVNVSYEPRWIIYFAGLGVLIVQILSSIKFYKTFLTNNEENARFEQVEVISERAPLLSRKDSDNSSWCSSYNSFSSENSDEGKSIIEGETSNLQCLCVICFDASRDCFFLPCGHFATCYACGTRIAEETCSCPICRRKLKKVRKIYIV* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1668 430 Pfam Domain of unknown function (DUF4793) 203 307 IPR032010 -
Mtr3g1668 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 430 IPR013083 -
Mtr3g1668 430 PANTHER OS05G0521000 PROTEIN 24 430 IPR044586 GO:0004842
Mtr3g1668 430 SMART ring_2 379 417 IPR001841 -
Mtr3g1668 430 Pfam Domain of unknown function (DUF4792) 110 178 IPR032008 -
Mtr3g1668 430 PANTHER OS05G0521000 PROTEIN 24 430 - -
Mtr3g1668 430 SUPERFAMILY RING/U-box 378 424 - -
Mtr3g1668 430 MobiDBLite consensus disorder prediction 1 23 - -
Mtr3g1668 430 Pfam Zinc finger, C3HC4 type (RING finger) 377 424 - -
Mtr3g1668 430 MobiDBLite consensus disorder prediction 1 29 - -
Mtr3g1668 430 ProSiteProfiles Zinc finger RING-type profile. 379 418 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1668 Mtr-Chr3 28842408 28847051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1668 379 427 C3H Transcription Factor Family AT3G06140 34.694 7.04e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1668 - - mtr:MTR_3g463920 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1668 3 28842408 28847051 Mtr3g1668 3 28842408 28847051 ECH