Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr3g1667 | ATGGCAAAAACGACGTCGTTGCTTCTCTTTTCTCTGTTCCTCTTCGGAACCCTATCTCTTATTCAGGCAAAGAAGGCGAAAGAGGATAAGGAAGTGACAAACAAGGTTTACTTTGATGTTCAGATTGATGGAAAAGATGCAGGTCGTGTTGTAATAGGTCTTTTTGGGAAGACAGTTCCAAAAACAGCAGAAAACTTCAGAGCTCTTTGCACAGGGGAAAAGGGGATTGGTAAATCTGGAAAGCCTCTTCATTACAAAGGTAGCTCATTCCATAGGATCATCCCTAGCTTTATGATCCAAGGAGGTGATTTTACACATGGCAATGGAATGGGCGGAGAATCAATTTACGGAGAGAAGTTTGCAGATGAGAACTTCAAGCTAAAGCACACTGGTCCAGGATTTTTATCAATGGCAAATGCTGGTCCTGATACCAATGGTTCACAATTTTTCATTACAACTGTGACAACTAGCTGGTTGGATGGAAGGCATGTTGTTTTTGGAAAGGTGCTTTCGGGAATGGATGTTGTTTACAAGATTGAAGCTGAAGGAAATCAAAGTGGAACTCCCAAGAGCAAGGTTGTGATTGCTGATAGTGGTGAACTACCTCTATAA | 612 | 0.4167 | MAKTTSLLLFSLFLFGTLSLIQAKKAKEDKEVTNKVYFDVQIDGKDAGRVVIGLFGKTVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGNQSGTPKSKVVIADSGELPL* | 204 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr3g1667 | 203 | PIRSF | Peptidylpro_ismrse | 20 | 202 | IPR024936 | GO:0003755 | |
| Mtr3g1667 | 203 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 37 | 200 | IPR002130 | GO:0000413|GO:0003755 | |
| Mtr3g1667 | 203 | Gene3D | - | 21 | 202 | IPR029000 | - | |
| Mtr3g1667 | 203 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 85 | 102 | IPR020892 | GO:0003755|GO:0006457 | |
| Mtr3g1667 | 203 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1 | 12 | 203 | - | - | |
| Mtr3g1667 | 203 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 12 | 203 | - | - | |
| Mtr3g1667 | 203 | SUPERFAMILY | Cyclophilin-like | 31 | 201 | IPR029000 | - | |
| Mtr3g1667 | 203 | CDD | cyclophilin_ABH_like | 35 | 199 | - | - | |
| Mtr3g1667 | 203 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 39 | 198 | IPR002130 | GO:0000413|GO:0003755 | |
| Mtr3g1667 | 203 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 54 | 69 | IPR002130 | GO:0000413|GO:0003755 | |
| Mtr3g1667 | 203 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 90 | 102 | IPR002130 | GO:0000413|GO:0003755 | |
| Mtr3g1667 | 203 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 133 | 148 | IPR002130 | GO:0000413|GO:0003755 | |
| Mtr3g1667 | 203 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 148 | 160 | IPR002130 | GO:0000413|GO:0003755 | |
| Mtr3g1667 | 203 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 161 | 176 | IPR002130 | GO:0000413|GO:0003755 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr3g1667 | Mtr-Chr3 | 28833429 | 28837155 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr3g1667 | 48 | 198 | U-box Gene Family | AT5G67530 | 43.137 | 1.51e-28 | 110 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr3g1667 | K01802 | - | gmx:100792140 | 371.318 |
Event-related genes