Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1648 ATGAAACCAATTGGAGTACGTATTGGTGGTGGTGATAATTTAAAGATCACCAACCACTCTTCAATAGGTCCTCCTTTGACTGCCATTGATAGATTCTTATGGGGTCAACACAACCACTTCCCTCAAAAGAAACTTCAACAAAATGTTGATGGTCAAAACATTTGTAGCTTTGGTTATTCGAATGGTTCAACCTATAGTTTTATGTGGCCTAATAATAATATCATGTCTCAAGAAGCTAGCTTTGTTGATCATCTATTGGCAAATGAAGAGGTGATGAATTGGACACAACAAATTCCTTCATTGTGTGTGGAGAAAGAAGATGCGATCAATGGTTTAGGAAAGGGTGCAAAAATGGTTGGAAGAAGACCTAAGAAAGTGTCTTCCTTTTCTTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAATTGTTGAAGCTGGTGAAGCAATATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGCAGGGAACGATGGCATAATCATCTGAGGCCTGATATCAAAAAAGATAGTTGGAGTGAAGAAGAAGAAAGGATGCTTATTGAAACTCATGGCATGATTGGAAATCGTTGGGCAGAGATAGCAAAGAGAATTCCTGGAAGAACTGAGAATGCAATAAAGAATCATTGGAATGCAACAAAAAGGAGACAAAATTCAAGGAGAAAGAACAAAAGGCCTCAAACCACTGATGGTAAACCACAATCTTCTATTCTTCAAGACTATATCAAAACTTTGACTACTCAAAAAGCGTTCATCAGTACTACTGCTGCTGCTGCTGCTGCTGCTACTACTACTACTGCTACTAGCTCCGTGTCAGCGATCTCTGAGGACCCTTCTTCAAACCAATCTTCCTTTGTTTTTTCTAACCTATCTCATGAAAATTCATCATCACCACTTATATCTGAATCTTATGATGATGAACTTCTCTTCATGCAGCAACTTTTCAAGGTGAATAATAATGCTGAACCTGTTAACCCCTACTCCAAGAAACCCTCTTCAAACTCTTATCCATTGGATTATTCTTCCCAAACTAACAGTAATCAGATTCTCCCTGATGTTACTGATTGTGGATTTGTTCATTCCAATCCTTCCAATTACCCTAAGCCAAATTCACAAAACAACATGTACTTGAGTACTTCTTCCACACCTATGATGAATTACCTTAATTCTGACCACTACCTTCCTCCAATGCTGAATGGAATTCAGAATCAGAACAACGTGGAGTTGCATCTTGGGAATATGAATTTTTCAGAGGGGAAGAGAGAGATGGATTTGTTGGAGTTGGTTTCTTCTGCTCAGTTTTATTAG 1356 0.3864 MKPIGVRIGGGDNLKITNHSSIGPPLTAIDRFLWGQHNHFPQKKLQQNVDGQNICSFGYSNGSTYSFMWPNNNIMSQEASFVDHLLANEEVMNWTQQIPSLCVEKEDAINGLGKGAKMVGRRPKKVSSFSLIKGQWTDEEDRKLLKLVKQYGVRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERMLIETHGMIGNRWAEIAKRIPGRTENAIKNHWNATKRRQNSRRKNKRPQTTDGKPQSSILQDYIKTLTTQKAFISTTAAAAAAATTTTATSSVSAISEDPSSNQSSFVFSNLSHENSSSPLISESYDDELLFMQQLFKVNNNAEPVNPYSKKPSSNSYPLDYSSQTNSNQILPDVTDCGFVHSNPSNYPKPNSQNNMYLSTSSTPMMNYLNSDHYLPPMLNGIQNQNNVELHLGNMNFSEGKREMDLLELVSSAQFY* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1648 451 MobiDBLite consensus disorder prediction 218 252 - -
Mtr3g1648 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 234 IPR017930 -
Mtr3g1648 451 Pfam Myb-like DNA-binding domain 136 196 - -
Mtr3g1648 451 ProSiteProfiles Myb-like domain profile. 133 179 IPR001005 -
Mtr3g1648 451 Gene3D - 187 255 - -
Mtr3g1648 451 SMART sant 132 181 IPR001005 -
Mtr3g1648 451 SMART sant 184 232 IPR001005 -
Mtr3g1648 451 CDD SANT 187 230 IPR001005 -
Mtr3g1648 451 MobiDBLite consensus disorder prediction 337 360 - -
Mtr3g1648 451 Gene3D - 132 184 - -
Mtr3g1648 451 PANTHER MYB DOMAIN PROTEIN 64-RELATED 126 339 - -
Mtr3g1648 451 ProSiteProfiles Myb-like domain profile. 180 230 IPR001005 -
Mtr3g1648 451 CDD SANT 136 179 IPR001005 -
Mtr3g1648 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 183 IPR017930 -
Mtr3g1648 451 PANTHER MYB PROTEIN-RELATED 126 339 - -
Mtr3g1648 451 SUPERFAMILY Homeodomain-like 130 226 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1648 Mtr-Chr3 28577911 28581245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1648 23 448 MYB Transcription Factor Family AT5G11050 38.261 4.28e-79 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g1648 Myb_DNA-bind_6 2.9e-21 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1648 3 28577911 28581245 Mtr3g1648 3 28577911 28581245 ECH