Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1644 ATGGCTACTATTGCTACTTTCTTCAACAAATTTTACTATGTTTTGATCCTCATTGTCCACCTTGGATGCTTCATGTTCACCGTCGCCGCCGCCACCGCCGGAAAACAAGATAACCGTCAATTATTACCATCAAAGAAACGAAAAATCTCACCTTTATCACAACCCTCTTCACCTTCTCACCCTAAATTCAAAACCCATAAAACTCTTTCTTCTTCTTGGCATTTCATCAAACACCTCTTCTGCAAAAATTCAAGTAAAACTGTAACCACCACTCCCACCACCCAATCATCACCTCAGTCCACCATTACAAACACCGTGAAAGCCTCCACACAATCACTTATCTCATTGGTTCAACCCGACCCGAGTTTCCAAGATCCACCACGGAAGAAACAATCCGAATCAGATATTTCCGCTGATAATAACAACCTCTTCTTCCCTCTCCGTAATGACATCTTCCCATGTACTGCGTGTGGCGAGATTTTTCAGAAACCCAACCTCCTCGAGAATCACCAATCCGCAAACCATGCAGTTTCGGAGCTTATAGGATCCGACCCGGGTCACAATATCGTGCAAATCATCTTCAAATCGGGTTGGCCAGAAACAAACACCTTCCCAAACATACACCGAATCATGAAGATCCATAACAGCCAGAAAATCCTCTCGAAATTCGAAGAATATCGCGAAACGGTGAAGATTAAAGCAGCGCGTGGTGTCACGCGCCGCCGTGACGAACGCTGTATTGCTGACGGGAATGAACTCATGCGTTTTCATTGCTCAACTTTTTTATGTGAGTTGGGACATAACGGGGATTCTTCGATTTGTTCTCAGCAATTTTGTAATATCTGTGGAATTATTAAATCAGGGTTTTCCCCAAAATTAGATGGAATTTCCACGCTGTCGACTAGCTGGAGGGCACACGTGTCAATTCCTGATGACATCGAGCGGGAGTTTAAGTTCATGAACGTCAAACGGGCAATGCTCGTTTGTCGTGTTATTGCGGGTCGGGTTGGGTCAGATTTGGACGATGAGGTGGATAAAACCGATGGAGGTTTTGATTCGGTGATGGCGCGGGGCGAGAGTGGTGTTTACACAAGACTTGATGAGGAGGAGTTGGTTGTTTTTAATCCTAGGGCTGTTCTTCCTTGCTTTGTGATTGTGTATAGTGTGTAA 1170 0.447 MATIATFFNKFYYVLILIVHLGCFMFTVAAATAGKQDNRQLLPSKKRKISPLSQPSSPSHPKFKTHKTLSSSWHFIKHLFCKNSSKTVTTTPTTQSSPQSTITNTVKASTQSLISLVQPDPSFQDPPRKKQSESDISADNNNLFFPLRNDIFPCTACGEIFQKPNLLENHQSANHAVSELIGSDPGHNIVQIIFKSGWPETNTFPNIHRIMKIHNSQKILSKFEEYRETVKIKAARGVTRRRDERCIADGNELMRFHCSTFLCELGHNGDSSICSQQFCNICGIIKSGFSPKLDGISTLSTSWRAHVSIPDDIEREFKFMNVKRAMLVCRVIAGRVGSDLDDEVDKTDGGFDSVMARGESGVYTRLDEEELVVFNPRAVLPCFVIVYSV* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1644 389 SUPERFAMILY ADP-ribosylation 177 388 - -
Mtr3g1644 389 MobiDBLite consensus disorder prediction 117 137 - -
Mtr3g1644 389 MobiDBLite consensus disorder prediction 47 65 - -
Mtr3g1644 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 180 IPR013087 -
Mtr3g1644 389 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 388 - -
Mtr3g1644 389 PANTHER NUCLEIC ACID BINDING PROTEIN 3 388 - -
Mtr3g1644 389 MobiDBLite consensus disorder prediction 39 65 - -
Mtr3g1644 389 ProSitePatterns Zinc finger C2H2 type domain signature. 154 175 IPR013087 -
Mtr3g1644 389 Gene3D - 179 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1644 Mtr-Chr3 28529348 28531272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1644 73 389 C2H2 Transcription Factor Family AT2G29660 55.152 2.51e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g1644 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1644 - - gmx:100785244 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1644 3 28529348 28531272 Mtr3g1644 3 28529348 28531272 ECH