Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1632 ATGAAGTGGGAAATGGAAATTCTTTCACCAAACTCACACCCTCATGCACCATTTGTTCAAAATTCCAACAATACCAACAATTGGTTTTTGGAAGATTGTAGCAATAGCATTAACAGGAGTACAAAATGGACTCCTGCAGAGAACAAATTGTTTGAAAATGCTCTTGCAGTTTATGATAAAGACACGCCGGATCGGTGGCATAAGGTAGCTGCAATGATCCCTGGAAAGAGTGTTGTTGATGTTATGAATCAGTATAAGGAATTGGAAGCTGATGTTTGTAATATAGAAGCTGGTTTGGTTCCAATTCCTGGTTATAGTACTACTGCTTCACCTTTTACCTTAGATTGGGTGAATTCTTCTGGTTATGATGGTTTTAGAGGAATTAGTGGAAAGAGAGGCTCTTCTGGTAGATCTCCTGATCAGGAAAGGAAGAAAGGTGTGCCATGGACCGAAGAAGAACACAAGTTGTTTCTATTGGGTCTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATTTCAAGGAACTTTGTGATCACTAGGACACCAACACAAGTAGCTAGCCATGCTCAGAAATATTTCATCAGACAACTTTCAGGAGGCAAAGACAAAAGAAGAGCAAGCATTCATGACATAACAACAGTTAATCTCACAGAAGTTTCTAGAACTTCTCCAACTTCAGAAGAAACCAAGAGATCCACTTCACCAAACATGATTATGAACAAGTATTCCACTGCTAACACCACTTCTGAGATGCATTTTCAGCCAGCTACTATGACAGCATTCAATCCATCACATGAACAAGTTTTCATGTCACCTTATGGAGTTAATAATAATAACTCTTATGGATTTAAAATGCAAGGTCAAAATATGCATAGAAATCCTCTTCATGAGTCTTCTTATTTTGGACCTCAGACACAAAACATGGTTTTCCAAATGCAATCTTCTCAACAACACTATTCACATGCATGA 969 0.3808 MKWEMEILSPNSHPHAPFVQNSNNTNNWFLEDCSNSINRSTKWTPAENKLFENALAVYDKDTPDRWHKVAAMIPGKSVVDVMNQYKELEADVCNIEAGLVPIPGYSTTASPFTLDWVNSSGYDGFRGISGKRGSSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEVSRTSPTSEETKRSTSPNMIMNKYSTANTTSEMHFQPATMTAFNPSHEQVFMSPYGVNNNNSYGFKMQGQNMHRNPLHESSYFGPQTQNMVFQMQSSQQHYSHA* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1632 322 Gene3D - 34 102 - -
Mtr3g1632 322 SMART sant 39 91 IPR001005 -
Mtr3g1632 322 SMART sant 145 195 IPR001005 -
Mtr3g1632 322 SUPERFAMILY Homeodomain-like 143 196 IPR009057 -
Mtr3g1632 322 Pfam Myb-like DNA-binding domain 42 87 IPR001005 -
Mtr3g1632 322 Pfam Myb-like DNA-binding domain 148 193 IPR001005 -
Mtr3g1632 322 MobiDBLite consensus disorder prediction 128 147 - -
Mtr3g1632 322 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 291 - -
Mtr3g1632 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 197 IPR017930 -
Mtr3g1632 322 ProSiteProfiles SANT domain profile. 149 197 IPR017884 -
Mtr3g1632 322 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 291 IPR043363 -
Mtr3g1632 322 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Mtr3g1632 322 ProSiteProfiles Myb-like domain profile. 141 193 IPR001005 -
Mtr3g1632 322 CDD SANT 42 88 IPR001005 -
Mtr3g1632 322 Gene3D - 147 197 - -
Mtr3g1632 322 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 144 196 IPR006447 GO:0003677
Mtr3g1632 322 CDD SANT 148 193 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1632 Mtr-Chr3 28324567 28327372 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g1632 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1632 - - cam:101514273 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1632 3 28324567 28327372 Mtr3g1632 3 28324567 28327372 ECH
Mtr3g1632 3 28324567 28327372 Mtr5g2785 5 36287442 36289937 ECH
Mtr5g2351 5 30879598 30882345 Mtr3g1632 3 28324567 28327372 ECH
Mtr7g1601 7 31330233 31333032 Mtr3g1632 3 28324567 28327372 ECH
Mtr1g1968 1 29292898 29296711 Mtr3g1632 3 28324567 28327372 ECH