Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr3g1625 | ATGAGTCAAAATCATAGTGATCCCATGACTCGGTCTAGTTCTTCTCTTTCAGCAAATGAAACTCAAACTACTAGGAATAGAAAATCACTTTTAGAAGATGGTGACACCAAAAAAACCCTAGGAGCTAAAAGAATCATGAGTCAAAACTATAGTCTTCCCATGACTCGGTCTTGTTCGTCTCATTTTGCAAATGAAACTCAATCTTCTAGGAACAGAAAATCTCTTTTAGAAGATTGTGACACAAACAAAACCCTAGGACCTAAGAAAATAATGAGTCAAAACTATAGTCTTCCCATGACTCCTTCTCATTTTGCAAATGAAACTCAATCTTTTAGGATCAGAAAATCTCTTTTAGAAGATCGTGAATCAAACAAAACCCTAGGACCTAACAAAATAATGAGTCAAAACTATAGACTTCCCATGACTCCTTCTCATTTTGCAAATGAAACTCAATCTTTTAGGATCAGAAAATCTCTTTTAGAAGATCGTGAATCAAACAAAACCCTAGGACCTAAAAATATAATGAGTCAAAACTATAGACTTCCCATGACTCCTTCTCATTTTGCAAATGAAACTCAATCCTTTAGGAACAGAAAATCTCTTTTAGAAGATCGTGCCGCAAACAAAACACTGGGACCTAAAAAAATCATGAGTCAAAACTATAGTCTTCCCTTGACTTCTCATTTTGCAAATGAAACTCAATCTTCTAGGAACAGAAAATCTCTTTTAGAAGATCATGGTGAAGAGAAAAAGAAGCAAGCAACCACTAGGACAATTATCTGTCAAGGTCAATCCTCGAAAAGCTTCAGCTGTGGTATATGCTTTGATTCTGTAACAGTCTCTAAAATGTTCACAACAAGTTCATGCAATCATCCCTTTTGTACTAATTGCATATCCATGTATGTGGATGTTCAGAGAAAAGAAAACGTGGTGAAACTAAATTGTCCAAATCCAGATTGTTCTGTGGAACTGAAACCAGAACATGTGGAATCCATTATACCTAAACAAGTCATTGTTGAATGGGAATCTGCAATTTATGAATCTTCTATTGCTATGATGCAAAAAATGTACTGCCCTTATGAGAATTGTTCTCTTTTGTTGGTGAACGACGAGGTAGAGGTTGTTACAAGTTGTGAATGTCCATCTTGTCATAGGCTGTTTTGTGCACAATGTAAAGTTCCGTGGCATACAAATATGAATTGTCAGGAGTTTCAGGAGTGGAAAGACAACCAAGATGAAGAACAATTGGAAAGGAAATTTTTGGAGTTGGCTAATAGTGAAAAATGGCAGAGATGTCCCAAATGCTCTATGCATGTCCAGAGAAATGGTGGATGTGAACACATGCGCTGCAGGTTGTTTATCTTGGCTTCTTTGGCTCATCGTTAA | 1386 | 0.3644 | MSQNHSDPMTRSSSSLSANETQTTRNRKSLLEDGDTKKTLGAKRIMSQNYSLPMTRSCSSHFANETQSSRNRKSLLEDCDTNKTLGPKKIMSQNYSLPMTPSHFANETQSFRIRKSLLEDRESNKTLGPNKIMSQNYRLPMTPSHFANETQSFRIRKSLLEDRESNKTLGPKNIMSQNYRLPMTPSHFANETQSFRNRKSLLEDRAANKTLGPKKIMSQNYSLPLTSHFANETQSSRNRKSLLEDHGEEKKKQATTRTIICQGQSSKSFSCGICFDSVTVSKMFTTSSCNHPFCTNCISMYVDVQRKENVVKLNCPNPDCSVELKPEHVESIIPKQVIVEWESAIYESSIAMMQKMYCPYENCSLLLVNDEVEVVTSCECPSCHRLFCAQCKVPWHTNMNCQEFQEWKDNQDEEQLERKFLELANSEKWQRCPKCSMHVQRNGGCEHMRCRLFILASLAHR* | 462 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr3g1625 | 461 | Pfam | Zinc finger, C3HC4 type (RING finger) | 271 | 316 | IPR018957 | GO:0046872 | |
Mtr3g1625 | 461 | ProSiteProfiles | Zinc finger RING-type profile. | 271 | 316 | IPR001841 | - | |
Mtr3g1625 | 461 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Mtr3g1625 | 461 | SUPERFAMILY | RING/U-box | 351 | 408 | - | - | |
Mtr3g1625 | 461 | MobiDBLite | consensus disorder prediction | 86 | 103 | - | - | |
Mtr3g1625 | 461 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 264 | 352 | IPR013083 | - | |
Mtr3g1625 | 461 | SMART | ibrneu5 | 339 | 401 | IPR002867 | - | |
Mtr3g1625 | 461 | Gene3D | - | 399 | 452 | - | - | |
Mtr3g1625 | 461 | MobiDBLite | consensus disorder prediction | 61 | 103 | - | - | |
Mtr3g1625 | 461 | ProSitePatterns | Zinc finger RING-type signature. | 289 | 298 | IPR017907 | - | |
Mtr3g1625 | 461 | MobiDBLite | consensus disorder prediction | 228 | 255 | - | - | |
Mtr3g1625 | 461 | ProSiteProfiles | TRIAD supradomain profile. | 267 | 461 | IPR044066 | - | |
Mtr3g1625 | 461 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 232 | 451 | - | - | |
Mtr3g1625 | 461 | SUPERFAMILY | RING/U-box | 420 | 450 | - | - | |
Mtr3g1625 | 461 | SUPERFAMILY | RING/U-box | 266 | 349 | - | - | |
Mtr3g1625 | 461 | Pfam | IBR domain, a half RING-finger domain | 351 | 401 | IPR002867 | - | |
Mtr3g1625 | 461 | MobiDBLite | consensus disorder prediction | 238 | 255 | - | - | |
Mtr3g1625 | 461 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Mtr3g1625 | 461 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 232 | 451 | IPR031127 | GO:0004842|GO:0016567 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr3g1625 | Mtr-Chr3 | 28235802 | 28237187 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr3g1625 | 251 | 451 | C3H Transcription Factor Family | AT2G19610 | 27.570 | 2.48e-20 | 90.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr3g1625 | K11975 | - | mtr:MTR_3g462570 | 305.449 |