Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1625 ATGAGTCAAAATCATAGTGATCCCATGACTCGGTCTAGTTCTTCTCTTTCAGCAAATGAAACTCAAACTACTAGGAATAGAAAATCACTTTTAGAAGATGGTGACACCAAAAAAACCCTAGGAGCTAAAAGAATCATGAGTCAAAACTATAGTCTTCCCATGACTCGGTCTTGTTCGTCTCATTTTGCAAATGAAACTCAATCTTCTAGGAACAGAAAATCTCTTTTAGAAGATTGTGACACAAACAAAACCCTAGGACCTAAGAAAATAATGAGTCAAAACTATAGTCTTCCCATGACTCCTTCTCATTTTGCAAATGAAACTCAATCTTTTAGGATCAGAAAATCTCTTTTAGAAGATCGTGAATCAAACAAAACCCTAGGACCTAACAAAATAATGAGTCAAAACTATAGACTTCCCATGACTCCTTCTCATTTTGCAAATGAAACTCAATCTTTTAGGATCAGAAAATCTCTTTTAGAAGATCGTGAATCAAACAAAACCCTAGGACCTAAAAATATAATGAGTCAAAACTATAGACTTCCCATGACTCCTTCTCATTTTGCAAATGAAACTCAATCCTTTAGGAACAGAAAATCTCTTTTAGAAGATCGTGCCGCAAACAAAACACTGGGACCTAAAAAAATCATGAGTCAAAACTATAGTCTTCCCTTGACTTCTCATTTTGCAAATGAAACTCAATCTTCTAGGAACAGAAAATCTCTTTTAGAAGATCATGGTGAAGAGAAAAAGAAGCAAGCAACCACTAGGACAATTATCTGTCAAGGTCAATCCTCGAAAAGCTTCAGCTGTGGTATATGCTTTGATTCTGTAACAGTCTCTAAAATGTTCACAACAAGTTCATGCAATCATCCCTTTTGTACTAATTGCATATCCATGTATGTGGATGTTCAGAGAAAAGAAAACGTGGTGAAACTAAATTGTCCAAATCCAGATTGTTCTGTGGAACTGAAACCAGAACATGTGGAATCCATTATACCTAAACAAGTCATTGTTGAATGGGAATCTGCAATTTATGAATCTTCTATTGCTATGATGCAAAAAATGTACTGCCCTTATGAGAATTGTTCTCTTTTGTTGGTGAACGACGAGGTAGAGGTTGTTACAAGTTGTGAATGTCCATCTTGTCATAGGCTGTTTTGTGCACAATGTAAAGTTCCGTGGCATACAAATATGAATTGTCAGGAGTTTCAGGAGTGGAAAGACAACCAAGATGAAGAACAATTGGAAAGGAAATTTTTGGAGTTGGCTAATAGTGAAAAATGGCAGAGATGTCCCAAATGCTCTATGCATGTCCAGAGAAATGGTGGATGTGAACACATGCGCTGCAGGTTGTTTATCTTGGCTTCTTTGGCTCATCGTTAA 1386 0.3644 MSQNHSDPMTRSSSSLSANETQTTRNRKSLLEDGDTKKTLGAKRIMSQNYSLPMTRSCSSHFANETQSSRNRKSLLEDCDTNKTLGPKKIMSQNYSLPMTPSHFANETQSFRIRKSLLEDRESNKTLGPNKIMSQNYRLPMTPSHFANETQSFRIRKSLLEDRESNKTLGPKNIMSQNYRLPMTPSHFANETQSFRNRKSLLEDRAANKTLGPKKIMSQNYSLPLTSHFANETQSSRNRKSLLEDHGEEKKKQATTRTIICQGQSSKSFSCGICFDSVTVSKMFTTSSCNHPFCTNCISMYVDVQRKENVVKLNCPNPDCSVELKPEHVESIIPKQVIVEWESAIYESSIAMMQKMYCPYENCSLLLVNDEVEVVTSCECPSCHRLFCAQCKVPWHTNMNCQEFQEWKDNQDEEQLERKFLELANSEKWQRCPKCSMHVQRNGGCEHMRCRLFILASLAHR* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1625 461 Pfam Zinc finger, C3HC4 type (RING finger) 271 316 IPR018957 GO:0046872
Mtr3g1625 461 ProSiteProfiles Zinc finger RING-type profile. 271 316 IPR001841 -
Mtr3g1625 461 MobiDBLite consensus disorder prediction 1 25 - -
Mtr3g1625 461 SUPERFAMILY RING/U-box 351 408 - -
Mtr3g1625 461 MobiDBLite consensus disorder prediction 86 103 - -
Mtr3g1625 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 352 IPR013083 -
Mtr3g1625 461 SMART ibrneu5 339 401 IPR002867 -
Mtr3g1625 461 Gene3D - 399 452 - -
Mtr3g1625 461 MobiDBLite consensus disorder prediction 61 103 - -
Mtr3g1625 461 ProSitePatterns Zinc finger RING-type signature. 289 298 IPR017907 -
Mtr3g1625 461 MobiDBLite consensus disorder prediction 228 255 - -
Mtr3g1625 461 ProSiteProfiles TRIAD supradomain profile. 267 461 IPR044066 -
Mtr3g1625 461 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 232 451 - -
Mtr3g1625 461 SUPERFAMILY RING/U-box 420 450 - -
Mtr3g1625 461 SUPERFAMILY RING/U-box 266 349 - -
Mtr3g1625 461 Pfam IBR domain, a half RING-finger domain 351 401 IPR002867 -
Mtr3g1625 461 MobiDBLite consensus disorder prediction 238 255 - -
Mtr3g1625 461 MobiDBLite consensus disorder prediction 1 39 - -
Mtr3g1625 461 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 232 451 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1625 Mtr-Chr3 28235802 28237187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1625 251 451 C3H Transcription Factor Family AT2G19610 27.570 2.48e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1625 K11975 - mtr:MTR_3g462570 305.449