Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1624 ATGAAGACCAAATCTCTTTCAAAGCTCATCAAGCAAGCAATCACTCAGACCAACAAACAGATACAGATCAAGCCAGAAAAAGATAAAAGCAAAACAAAGACAGCTATAGAACAAGGTCAATCCTCTAAAATCTGTTGTGGTATATGCTTTGATACTGTAACAAACTCTAATATGTTTTCAACCGGTTTATGCAATCATCCCTTTTGTACTAAGTGCATATCCAAGTATGTGAAGATTCAAATAAAAGAAAAAGTGGTTAAAATCAAGTGTCCGGATCCAGAATGTTCTGTTGAACTCAAACCAGAACATTTGCAATGCATTTTACCTAAAAAAATCATTGCTGACTGGGAATCTGCAAACTGCGAGGCTTCCATTGCTTTGAAGGAAAAATTTTACTGTCCTTACAAGAATTGTTCTCTTTTATTGGTGAATGAGGAAGCAGGCCGTGCTATTACTAGTTGTGAATGCCCTTATTGTCATAGGTTATTCTGTGCACAATGTAAAGTTCCATGGCACGGAAATATGAATTGTCAAGAATTTCAGAAGTCGGAAATAGGTCAAGGCTTAAAACAATCCGATAGGAAGTTTTTGGAGTTGGCTAAAAGAGAAAAGTGGAAGAGATGTCCAAAATGTTCTATGCATGTACAGAGAACTACTGGATGTGTGGGTGTCACTTCTGCTACATTTGTGGTAGGGATTGGGATGGGTTTCATACTTGCAATCATCGGGCAAGATAAGAAATGCCGTCAATTTCAGAAGTCAAAAAAGGTTCTAGGTGAAAAACAACTTGACAAGAAATTAGCACAGTTGGCTAAAACTGAAATGTGGCAGAAATGTCCGAGATGTTCTATCCATGTCGAGAAAACTTTGGGATGTGATTTCATGAAGTGCAGGTGTGGATGTTACTTCTGCTACACGTGTGGTAAGAAATTCAAGGAATTTCACTTTGCAAATCATGGCAAAGAGCATGTTACAGGCTCAAAGACAAATGAGAACATTCGGGTTTTAGGAAGCTTATGTGGCAAAAATGCAGGAAGTTCTATCTGTTGGTGA 1053 0.3799 MKTKSLSKLIKQAITQTNKQIQIKPEKDKSKTKTAIEQGQSSKICCGICFDTVTNSNMFSTGLCNHPFCTKCISKYVKIQIKEKVVKIKCPDPECSVELKPEHLQCILPKKIIADWESANCEASIALKEKFYCPYKNCSLLLVNEEAGRAITSCECPYCHRLFCAQCKVPWHGNMNCQEFQKSEIGQGLKQSDRKFLELAKREKWKRCPKCSMHVQRTTGCVGVTSATFVVGIGMGFILAIIGQDKKCRQFQKSKKVLGEKQLDKKLAQLAKTEMWQKCPRCSIHVEKTLGCDFMKCRCGCYFCYTCGKKFKEFHFANHGKEHVTGSKTNENIRVLGSLCGKNAGSSICW* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1624 350 ProSiteProfiles Zinc finger RING-type profile. 46 91 IPR001841 -
Mtr3g1624 350 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Mtr3g1624 350 Pfam Zinc finger, C3HC4 type (RING finger) 46 91 IPR018957 GO:0046872
Mtr3g1624 350 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 7 223 IPR031127 GO:0004842|GO:0016567
Mtr3g1624 350 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 245 317 IPR031127 GO:0004842|GO:0016567
Mtr3g1624 350 SMART ibrneu5 114 177 IPR002867 -
Mtr3g1624 350 Pfam IBR domain, a half RING-finger domain 128 177 IPR002867 -
Mtr3g1624 350 SUPERFAMILY RING/U-box 41 123 - -
Mtr3g1624 350 SUPERFAMILY RING/U-box 265 317 - -
Mtr3g1624 350 SUPERFAMILY RING/U-box 128 183 - -
Mtr3g1624 350 ProSiteProfiles TRIAD supradomain profile. 42 326 IPR044066 -
Mtr3g1624 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 128 IPR013083 -
Mtr3g1624 350 Gene3D - 246 334 - -
Mtr3g1624 350 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 7 223 - -
Mtr3g1624 350 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 245 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1624 Mtr-Chr3 28223510 28228231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1624 23 225 C3H Transcription Factor Family AT2G19610 30.986 8.26e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1624 K11975 - mtr:MTR_3g462570 456.062