Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1623 ATGAAGGCAAAATCTCTTTCAGAAGACCGAGACGATGAAAAGAAGGAGAATAAGCAAGCAACTACTAGGACCAACAAACAGATACAGATCAAGCCAAAAGAAAACAAAAACAACACAAATACAGATATCGAACAAGGCCAATCCTCAAAAATCTTCTGTGGTATATGCTTAACAAACTCTAATATGTTTTCAACCGGTTTATGCAATCATCCCTTTTGTACTATAAGCATATCCAAGTATGCAAAGATTCAAATAAAAGAAAAAGTTGTGAAAGTGAAGTGCCCAGATCCAGAATGTTCAGTTGAACTCAAACAAGAACATTTGCAATCCATTTTACCTAACGAAATCATTGTTGATTGGGAATCTGCAAACTGCGAGGCTTCCATTGCTTTGAAGGAAAAAATTTACTGTCCTTATAAGAATTGTTCTCTTTTATTGGTGAATGACGAAGCAGGTGCTGTTACAAGTTGTGAATGCCCTTCTTGTCATAGGTTATTCTGTGCACAATGTAAAGTTCCGTGGCACGCAAATATGAATTGTCAAGAATTTCAGAATTCGGAAATAGGGCAAGGCTTAAAACAATCCGATAGGAAGTTTTTGGAGTTGGCTAAAAGAGAAAAGTGGAAAAGATGTCCAAAATGTTCTATGCATGTACAGAGAACTACTGGATGTGTGGCTGTCACTTCTGCTACATGTGTGGCAGGGATTGGAATTGGTATCATACTTGCAATCAAAATCCAAGGTACTATGAATACATAG 759 0.3702 MKAKSLSEDRDDEKKENKQATTRTNKQIQIKPKENKNNTNTDIEQGQSSKIFCGICLTNSNMFSTGLCNHPFCTISISKYAKIQIKEKVVKVKCPDPECSVELKQEHLQSILPNEIIVDWESANCEASIALKEKIYCPYKNCSLLLVNDEAGAVTSCECPSCHRLFCAQCKVPWHANMNCQEFQNSEIGQGLKQSDRKFLELAKREKWKRCPKCSMHVQRTTGCVAVTSATCVAGIGIGIILAIKIQGTMNT* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1623 252 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 3 233 - -
Mtr3g1623 252 MobiDBLite consensus disorder prediction 1 42 - -
Mtr3g1623 252 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 3 233 IPR031127 GO:0004842|GO:0016567
Mtr3g1623 252 SMART ibrneu5 118 180 IPR002867 -
Mtr3g1623 252 MobiDBLite consensus disorder prediction 22 42 - -
Mtr3g1623 252 SUPERFAMILY RING/U-box 195 228 - -
Mtr3g1623 252 SUPERFAMILY RING/U-box 48 127 - -
Mtr3g1623 252 ProSiteProfiles TRIAD supradomain profile. 49 252 IPR044066 -
Mtr3g1623 252 Coils Coil 3 23 - -
Mtr3g1623 252 MobiDBLite consensus disorder prediction 1 21 - -
Mtr3g1623 252 SUPERFAMILY RING/U-box 132 185 - -
Mtr3g1623 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 130 IPR013083 -
Mtr3g1623 252 Pfam IBR domain, a half RING-finger domain 132 180 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1623 Mtr-Chr3 28222380 28223294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1623 45 232 C3H Transcription Factor Family AT2G19610 27.228 7.30e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1623 K11975 - mtr:MTR_3g462570 382.104