Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1620 ATGAAGACCAAATCTCTTTCAAAGCTCATCAAGCAAGCAATCACTCAGACCAACAAACAGATACAGATCAAGCCAGAAAAAGATAAAAGCAAAACAAAGACAGCTATAGAACAAGGTCAATCCTCTAAAATCTGTTGTGGTATATGCTTTGATTCTGTAACAAACTCTAATATGTTTTCAACCGGTTTATGCAATCATCCCTTTTGTACTAAGTGCATATCCAAGTATGTGAAGATTGAAATAAAAGAAAAAGTGGTTAAAATCAAGTGTCCGGATCCAGAATGTTCTGTTGAACTCAAACCAGAACATTTGCAATGCATTTTACCTAAAAAAATCATTGTTGATTGGGAATCTGCAAACTGCGAGGCTTCCATTGCTTTGAAGGAAAAATTTTACTGTCCTTACAAGAATTGTTCTCTTTTATTGGTGAATGACGAAGCAGGCCGTGCTATTACTAGCTGTGAATGCCCTTATTGTCATAGGTTATTCTGTGCACAATGTAAAGTTCCATGGCACGGAAATATGAATTGTCAAGAATTTGAGAAGTCGGAAATAGGTCAAGGCTTAAAACAATCCGATAGGAAGTTTTTGGAGTTGGCTAAAAGAGAAAAGTGGAAGAGATGTCCAAAATGTTCTATGCATGTACAGAGAACTACTGGATGTGTGGCTGTCACTTCTGCTACATGTGTGGCAGGGATTGGAATTGGTATCATACTTGCAATCAAAATCCAAGGTACTATATGA 744 0.3696 MKTKSLSKLIKQAITQTNKQIQIKPEKDKSKTKTAIEQGQSSKICCGICFDSVTNSNMFSTGLCNHPFCTKCISKYVKIEIKEKVVKIKCPDPECSVELKPEHLQCILPKKIIVDWESANCEASIALKEKFYCPYKNCSLLLVNDEAGRAITSCECPYCHRLFCAQCKVPWHGNMNCQEFEKSEIGQGLKQSDRKFLELAKREKWKRCPKCSMHVQRTTGCVAVTSATCVAGIGIGIILAIKIQGTI* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1620 247 SMART ibrneu5 114 177 IPR002867 -
Mtr3g1620 247 Pfam Zinc finger, C3HC4 type (RING finger) 46 91 IPR018957 GO:0046872
Mtr3g1620 247 SUPERFAMILY RING/U-box 41 123 - -
Mtr3g1620 247 ProSiteProfiles TRIAD supradomain profile. 42 247 IPR044066 -
Mtr3g1620 247 Pfam IBR domain, a half RING-finger domain 128 177 IPR002867 -
Mtr3g1620 247 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Mtr3g1620 247 ProSiteProfiles Zinc finger RING-type profile. 46 91 IPR001841 -
Mtr3g1620 247 SUPERFAMILY RING/U-box 192 225 - -
Mtr3g1620 247 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 7 230 IPR031127 GO:0004842|GO:0016567
Mtr3g1620 247 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 7 230 - -
Mtr3g1620 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 129 IPR013083 -
Mtr3g1620 247 SUPERFAMILY RING/U-box 128 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1620 Mtr-Chr3 28198754 28199653 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1620 23 229 C3H Transcription Factor Family AT2G19610 30.093 4.24e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1620 K11975 - mtr:MTR_3g462570 457.218