Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1616 ATGAAGCGCTCACTCTCAGCATGTAATAGGATGAAGAGAAAATCTCATTCAGAAATCAATGATCAAAAGAAGAAGAAACCTGCACTCACACCGGTTAGGAGTTCATCACAATCATTGATCTTTGATAGCAAGCCAGAAAAATTATTCACAAAGACGATTGGTGGTGAATCCTCACGAAGCTTATGTGGTATATGCTTTGATTTGAAAACAGATTCAGATATGTTCAAAAGAAAGAGTTGCAACCACCTCTTTTGTGTTGAATGTATTTCCAAATATGTGGTTTCTCAAATTAACAACAATGTGGTTAAGGTGACTTGTCCAACTCCAAATTGTTTTGTGAAATTTGAGCCGAGACATTTGAAACATATTTTGCCTAGAGAATTTATTGATAGATGGGAACTTGCAGTGTATGAGTCTAAAATTGCATTGGACCAAAAGACTTATTGTCCATTTAAGAATTGTTCTGTTTTGTTGGTTAATGATAATAATAGGGGTGTGGTTTTGACTAGTTGCGAGTGTCCATCTTGTCACCGACTATTTTGTGCACAATGTAAGGTTCCATGGCATGCGGAGATGAATTGTCAGGAGTTTCAAGATTTGAAACGTCCTAAAAAGGAACAAGATTTGGATGATAAATTTTTGGAGTTGGCTAACAGAAAGAAGTGGCAGAGATGCCCAAATTGCTCTATCTATGTCAAGAGAAGTGATGGATGTGAACACATGAAATGCAGGTGTAAATGTAACTTCTGCTACCATTGTGGGGAGGAATGGAAGCATGGGCATTTATGCGAGAAGAGAAAATATTGA 807 0.3717 MKRSLSACNRMKRKSHSEINDQKKKKPALTPVRSSSQSLIFDSKPEKLFTKTIGGESSRSLCGICFDLKTDSDMFKRKSCNHLFCVECISKYVVSQINNNVVKVTCPTPNCFVKFEPRHLKHILPREFIDRWELAVYESKIALDQKTYCPFKNCSVLLVNDNNRGVVLTSCECPSCHRLFCAQCKVPWHAEMNCQEFQDLKRPKKEQDLDDKFLELANRKKWQRCPNCSIYVKRSDGCEHMKCRCKCNFCYHCGEEWKHGHLCEKRKY* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1616 268 Gene3D - 191 268 - -
Mtr3g1616 268 SUPERFAMILY RING/U-box 141 199 - -
Mtr3g1616 268 MobiDBLite consensus disorder prediction 1 35 - -
Mtr3g1616 268 ProSiteProfiles Zinc finger RING-type profile. 62 110 IPR001841 -
Mtr3g1616 268 SMART ibrneu5 207 263 IPR002867 -
Mtr3g1616 268 SMART ibrneu5 130 194 IPR002867 -
Mtr3g1616 268 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 10 263 IPR031127 GO:0004842|GO:0016567
Mtr3g1616 268 Pfam IBR domain, a half RING-finger domain 137 194 IPR002867 -
Mtr3g1616 268 Pfam IBR domain, a half RING-finger domain 216 262 IPR002867 -
Mtr3g1616 268 SUPERFAMILY RING/U-box 212 263 - -
Mtr3g1616 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 142 IPR013083 -
Mtr3g1616 268 SUPERFAMILY RING/U-box 57 139 - -
Mtr3g1616 268 ProSitePatterns Zinc finger RING-type signature. 80 89 IPR017907 -
Mtr3g1616 268 MobiDBLite consensus disorder prediction 11 28 - -
Mtr3g1616 268 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 10 263 - -
Mtr3g1616 268 ProSiteProfiles TRIAD supradomain profile. 58 268 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1616 Mtr-Chr3 28171230 28172174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1616 55 254 C3H Transcription Factor Family AT2G19610 28.571 3.88e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1616 K11975 - mtr:MTR_0777s0010 430.254