Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1615 ATGACGTGCTCACTCTCGAAAAAAGATCGAAACTCTGATGCAAAAACCAAGGCAGCATGCAAAATATCAATTACCAAGCTGAAGAAGATAATATCTCTTCCAGATTCTAATGCAAAGGAGAAGAAACCAAACATGATGAAGAGAAAATCACTTTCAGAAGGTTATGATGAAAAGAAAAAGAAAAAGAAAAAGAAACAAGATTCTCATGAAGAGAAGGAGAAACACAACTCATTCTCGGCGCCGTTAGTGATAAAAGAACAGTCAGAACATGATTCTGATGCAAAGGAGAAGAAACCACACATGGTGAAGAGAAAATCACTTCCAGATGGCTATAATGAAAAGAAGAAGAAAAAGAAACAAGAATCTCCTGAAAAGAAGGAGAAACACCGCTCATTCTCCGCGCCACTAGTGATAAAAGAACCGTCAGAACATGACTCTGATGCAAAGGAGAAGAAACCACACATGGTGAAGAGAAAATCACTTCCAGATGGCTATAATGAAAAGAAGAAGAAAAAGAAACAAGAATCTCCTGAAAAGAAGGAGAAACACCGCTCATTCTCCGCGCCACTAGTGATAAAAGAACCGTCAGAACATGACTCTGATGCAAAGCAGAAGAAACTAAAGAGAAAATCCACTTCAGAAAGCTACGATGAAAAGATGAAGAAACCATTAATCATTGATGAGGAACCAGAAGAATTCACCACTAAGATGTTAATTGGTGAATCCTCAAGAAGCTCATGTGGTATATGCTTTGATTTGAAAACTGATTTGGATATGTTCAAAAGAAAGAGTTGCAACCATCTCTTTTGTGTTGATTGTATTTCCAAATATGTGGATTCTCAACTCAACAATAATGTGGTTAAGGTGACTTGTCCAACTCCAAATTGTTCTGCAAAATTGTTGCCAAGACATTTGCAACATATTTTGCCTAAAGAATTTATCGATCGATGGGAGTTGGCAAAGTATGAGTCTAAAATTGCATTGGAGCAAAAGACTTATTGTGCATTCAAGGATTGTTCTGTTTTGCTGGTGAATGATAATGATAGGGGAGAGGTTTTGACTAGTTGCGAGTGTCCGTCTTGTCACCGGCTATTCTATGCACAATGTAAGGTTCCATGGCATGCGGAGATGAACTGTCAGGAATTTCAAGATTTGAAACACAATACAAATGAAGTAGATTTGGATGATAAGTTTTTGAAGTTAGCTAAAAGAAACAAGTGGCAGAGATGTCCAAATTGCTCTATCTATGTCAAGAGAAGGAGTGGATGTGAACACATGAAATGCAGGTGTAAATGCAACTTCTGCTACCTTTGTGGGAAGAAATGGAAGCATGGGCATTTATGCAAAAAGAGAGAACGTTTATTAGGGTAA 1371 0.3771 MTCSLSKKDRNSDAKTKAACKISITKLKKIISLPDSNAKEKKPNMMKRKSLSEGYDEKKKKKKKKQDSHEEKEKHNSFSAPLVIKEQSEHDSDAKEKKPHMVKRKSLPDGYNEKKKKKKQESPEKKEKHRSFSAPLVIKEPSEHDSDAKEKKPHMVKRKSLPDGYNEKKKKKKQESPEKKEKHRSFSAPLVIKEPSEHDSDAKQKKLKRKSTSESYDEKMKKPLIIDEEPEEFTTKMLIGESSRSSCGICFDLKTDLDMFKRKSCNHLFCVDCISKYVDSQLNNNVVKVTCPTPNCSAKLLPRHLQHILPKEFIDRWELAKYESKIALEQKTYCAFKDCSVLLVNDNDRGEVLTSCECPSCHRLFYAQCKVPWHAEMNCQEFQDLKHNTNEVDLDDKFLKLAKRNKWQRCPNCSIYVKRRSGCEHMKCRCKCNFCYLCGKKWKHGHLCKKRERLLG* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1615 456 MobiDBLite consensus disorder prediction 86 219 - -
Mtr3g1615 456 Pfam IBR domain, a half RING-finger domain 401 447 IPR002867 -
Mtr3g1615 456 Pfam IBR domain, a half RING-finger domain 320 379 IPR002867 -
Mtr3g1615 456 MobiDBLite consensus disorder prediction 33 79 - -
Mtr3g1615 456 ProSiteProfiles Zinc finger RING-type profile. 247 295 IPR001841 -
Mtr3g1615 456 Pfam Zinc finger, C3HC4 type (RING finger) 247 292 IPR018957 GO:0046872
Mtr3g1615 456 ProSitePatterns Zinc finger RING-type signature. 265 274 IPR017907 -
Mtr3g1615 456 Gene3D - 377 453 - -
Mtr3g1615 456 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 182 449 IPR031127 GO:0004842|GO:0016567
Mtr3g1615 456 SMART ibrneu5 315 379 IPR002867 -
Mtr3g1615 456 SMART ibrneu5 396 448 IPR002867 -
Mtr3g1615 456 SUPERFAMILY RING/U-box 242 324 - -
Mtr3g1615 456 ProSiteProfiles TRIAD supradomain profile. 243 452 IPR044066 -
Mtr3g1615 456 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 182 449 - -
Mtr3g1615 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 329 IPR013083 -
Mtr3g1615 456 MobiDBLite consensus disorder prediction 30 219 - -
Mtr3g1615 456 SUPERFAMILY RING/U-box 397 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1615 Mtr-Chr3 28141268 28142805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1615 235 439 C3H Transcription Factor Family AT2G19610 28.837 1.34e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1615 K11975 - mtr:MTR_0777s0010 902.123