Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1611 ATGACATCATATTCAAGGAGATCAAGGTATTCCCCCTCTCCCTCGCCCTCGCCTTCTCCATACAGGCGATACAGTAGGTCTGTTTCCCGATCTCTTTCAAGGAGCGTAACACCAGATGTGGAAAATCCAGGAAACAATTTGTATGTGACAGGACTGTCTCCTAGGATCACCAAGAGGGAACTGGAGAAGCATTTTTCTGCTAAAGGAAAAGTGGTAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAATCCCGTGGTTTTGGATTTGTGACAATGGATACTTTAGAAGAAGCTGATCGTTGTGTGAAGTATCTGAATCGCTCTGTACTTGAAGGTCGTGTTATTACGGTTGAGAAGGCTAGAAGACGACGTGGTCGAACCCCAACACCTGGGAAATATCTTGGTCTCAAAACTATTCGAGGACGGCGACGCTCTCCAAGCTACTCTCCTCGACGATCGCCTAGCTATTCTCCTTATAGAAGAAGCTACAATCGTTCACCTTATTCATCAGACCATAGTAGGAGTCGCTCTTACTCACCTGATTACAGGCGAAGGAGGTCTTACTCTCCTGACTACAGGCGAAGGAGGGCATACTCACCATACTACAGTCGACGCAGATCGTACTATCGTTATGACCGGCACAGATCATATTCTCGGTCTCGCTCTCCTTACAGCAGGTCTCCTGTCAGAATGCGTGATAGATCATACTCTCCCTATGGTTCCAGATATGAATCACCTGATGATAGCTACTGTGGAAGGTACCGTTACAGGTCGGTTTCTCGAAGTGTTTCACCAAGGCCAAGGAGGTCAAGGAGGAGCTACTCGCGAAGTGCATCTCCTGTTCGAAGTGTCTCCCCCAGGGCAAGAAAGAGATCAGGAAGGAGTCATTCAAGAATTTCTAGAAGGAGTGGCGGTTATTCCAAAGTTAAGCATTCTCGATCAAGAAGCTCAAGTGTGAGTGCGAGTTCAAGATCGTTTTCAAGGTCCAACACTCCTGGAACTACCTCTCCTTCAAACTGA 1023 0.4712 MTSYSRRSRYSPSPSPSPSPYRRYSRSVSRSLSRSVTPDVENPGNNLYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLKTIRGRRRSPSYSPRRSPSYSPYRRSYNRSPYSSDHSRSRSYSPDYRRRRSYSPDYRRRRAYSPYYSRRRSYYRYDRHRSYSRSRSPYSRSPVRMRDRSYSPYGSRYESPDDSYCGRYRYRSVSRSVSPRPRRSRRSYSRSASPVRSVSPRARKRSGRSHSRISRRSGGYSKVKHSRSRSSSVSASSRSFSRSNTPGTTSPSN* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1611 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Mtr3g1611 340 MobiDBLite consensus disorder prediction 213 340 - -
Mtr3g1611 340 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 12 263 - -
Mtr3g1611 340 MobiDBLite consensus disorder prediction 288 310 - -
Mtr3g1611 340 MobiDBLite consensus disorder prediction 149 176 - -
Mtr3g1611 340 MobiDBLite consensus disorder prediction 20 44 - -
Mtr3g1611 340 SUPERFAMILY RNA-binding domain, RBD 32 148 IPR035979 GO:0003676
Mtr3g1611 340 MobiDBLite consensus disorder prediction 311 340 - -
Mtr3g1611 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 116 IPR000504 GO:0003723
Mtr3g1611 340 PANTHER TRANSFORMER-2-RELATED 12 263 - -
Mtr3g1611 340 SMART rrm1_1 46 119 IPR000504 GO:0003723
Mtr3g1611 340 MobiDBLite consensus disorder prediction 122 200 - -
Mtr3g1611 340 MobiDBLite consensus disorder prediction 1 44 - -
Mtr3g1611 340 Gene3D - 2 129 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1611 Mtr-Chr3 28079837 28082600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1611 46 127 Eukaryotic Initiation Factors Gene Family AT2G36660 35.366 8.25e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1611 - - mtr:MTR_3g462330 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1611 3 28079837 28082600 Mtr3g1611 3 28079837 28082600 ECH