LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g1593	ATGCAACCCAAGTCCGAAACTGCAAATCAACCGAGGTCAGGTCCTCATTCCTTTCAGCCCGGTGGTGTTTACTCCGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTAGCGCAAACAATGTCTGGTGCCAATTCATCCTCTCTTGATTGTCCCAATGGTGATTCAGAATCCAATGAGGAAGGCCAGTCTTTGTCCAATAGTGAGAGGAATGAGGAAGATGATGATGCTGCTAAGGATTCACAGCCTGCTGCTCCCAATCAATCAGGAAATTACGGACAAGAACAAGGAATGCAGAATACTGCATCATCTGCAGTTATTCGCGAAGAATGCCTCACACAGACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGTGGCATGATGGCAGCTTATCCTCACCAGCCGTTGGGATATCCTCCTTTTATAGGAGTGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTTTGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGTGAGGCCTCGGGAAAGGATAATGGCTCTGGTCCAGTCTTGTCGTCGCAATCAATTAGTTCATCTGGTTCAGAACTTTTGCCTTCAGACTCTGCGGAAACCTGGAATTCTCCCAACATGCGACAAGATGCAAGAGGATCAAATGAAAATGGTGGTAGCTCCTACCATAATAACAACAATGGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGAAGAAGGGGACTGTTCAGGGCAGCTACGTGTAAGCATCTCCTCGAACGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAG	990	0.4657	MQPKSETANQPRSGPHSFQPGGVYSEPWWRGVGYNPVAQTMSGANSSSLDCPNGDSESNEEGQSLSNSERNEEDDDAAKDSQPAAPNQSGNYGQEQGMQNTASSAVIREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEASGKDNGSGPVLSSQSISSSGSELLPSDSAETWNSPNMRQDARGSNENGGSSYHNNNNGMQSSRYQGERVEEGDCSGQLRVSISSNEASQRRLAIQ*	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g1593	329	MobiDBLite	consensus disorder prediction	38	65	-	-
	Mtr3g1593	329	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	171	226	IPR001289	GO:0003700\|GO:0006355
	Mtr3g1593	329	MobiDBLite	consensus disorder prediction	1	16	-	-
	Mtr3g1593	329	MobiDBLite	consensus disorder prediction	1	102	-	-
	Mtr3g1593	329	MobiDBLite	consensus disorder prediction	82	102	-	-
	Mtr3g1593	329	PANTHER	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9	29	319	-	-
	Mtr3g1593	329	MobiDBLite	consensus disorder prediction	204	329	-	-
	Mtr3g1593	329	MobiDBLite	consensus disorder prediction	204	223	-	-
	Mtr3g1593	329	ProSiteProfiles	NF-YA/HAP2 family profile.	169	229	IPR001289	GO:0003700\|GO:0006355
	Mtr3g1593	329	ProSitePatterns	NF-YA/HAP2 subunit signature.	174	194	IPR018362	GO:0003677\|GO:0016602
	Mtr3g1593	329	Gene3D	-	169	231	-	-
	Mtr3g1593	329	PRINTS	CCAAT-binding transcription factor subunit B signature	172	194	IPR001289	GO:0003700\|GO:0006355
	Mtr3g1593	329	PRINTS	CCAAT-binding transcription factor subunit B signature	203	226	IPR001289	GO:0003700\|GO:0006355
	Mtr3g1593	329	SMART	cbf3	168	229	IPR001289	GO:0003700\|GO:0006355
	Mtr3g1593	329	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	29	319	IPR001289	GO:0003700\|GO:0006355
	Mtr3g1593	329	MobiDBLite	consensus disorder prediction	240	298	-	-
	Mtr3g1593	329	MobiDBLite	consensus disorder prediction	311	329	-	-
	Mtr3g1593	329	MobiDBLite	consensus disorder prediction	66	80	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g1593	Mtr-Chr3	27758915	27762785	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g1593	16	268	CCAAT-HAP2 Transcription Factor Family	AT5G12840	55.642	4.33e-84	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Mtr3g1593		CBFB_NFYA	4.8e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g1593	K08064		-	gmx:100808378	496.123