Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1580 ATGGCTAGAGGAAATTCTATCCGTTTCTTCAAAATCATCCTTCAAACTAATCTTCATAGGATTCAAATACCAAGTAAGTTTACAAAGAGACATGGAGTTGGTCTATCAAATCCAGTGGTGATAAAGACTCCTGATGACACTAAATGGAAAGTTTATTGGAAAAAAATCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAAAACTTTTACTGAAAATTACTCTCTTGGACATGGTTGCTTGGTGGTGTTTGAATATAAAGGAACTTTCAAGTTTGATGTAGTAATACTTGGCAAGAATGCATTAGAAATAGACTATGATACTTCATGTGACAGTGATGATGAAAATGACAATGTTGATCATAGTGATGATGATGAATCAGTTGAGATTTTGGATGAATGGCTTAATCGGAAGAAGGCTAGACAAAGATCACCTTTTGTTTCTTCTCGACCACATAAGAAAGTTCAAGGTGATGATGAGAAGACTACTAAAAGAACTTCATCAATGAATTGGCCAAAGGATGTTAGAGCTCAGGAAGTTGCTCAAAATTTCATCTCATGCAATCCATTTTTCACAATTCTCATCAAGCCAATTAATCTGGTAGAACATACTCGGTCTGTACCAGATTTAAAAGGGGTTATTGAGAACAAGGACACAAATGTGATGCTGCTGATTGGGAAAAGATCATGGAATGTGAAACTACTTCGTTCTTATGAGGGCAAAAATGGCCGTCGCCTTTCCGCGGGCTGGTACTTATTTGCAAGAGAAAGTGGACTGAAATCAGGAGATGTTTGTGTCTTTGAATTGATAAACAAGAAAGATTTGGTTTTTAAAATTCATGTTTACTAA 846 0.3593 MARGNSIRFFKIILQTNLHRIQIPSKFTKRHGVGLSNPVVIKTPDDTKWKVYWKKINGEIWFEKGWKTFTENYSLGHGCLVVFEYKGTFKFDVVILGKNALEIDYDTSCDSDDENDNVDHSDDDESVEILDEWLNRKKARQRSPFVSSRPHKKVQGDDEKTTKRTSSMNWPKDVRAQEVAQNFISCNPFFTILIKPINLVEHTRSVPDLKGVIENKDTNVMLLIGKRSWNVKLLRSYEGKNGRRLSAGWYLFARESGLKSGDVCVFELINKKDLVFKIHVY* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1580 281 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Mtr3g1580 281 SMART B3_2 189 278 IPR003340 GO:0003677
Mtr3g1580 281 SMART B3_2 9 99 IPR003340 GO:0003677
Mtr3g1580 281 CDD B3_DNA 8 96 IPR003340 GO:0003677
Mtr3g1580 281 CDD B3_DNA 189 281 IPR003340 GO:0003677
Mtr3g1580 281 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 5 280 - -
Mtr3g1580 281 Gene3D - 171 281 IPR015300 -
Mtr3g1580 281 SUPERFAMILY DNA-binding pseudobarrel domain 7 99 IPR015300 -
Mtr3g1580 281 Pfam B3 DNA binding domain 219 278 IPR003340 GO:0003677
Mtr3g1580 281 Pfam B3 DNA binding domain 16 94 IPR003340 GO:0003677
Mtr3g1580 281 SUPERFAMILY DNA-binding pseudobarrel domain 186 280 IPR015300 -
Mtr3g1580 281 Gene3D - 1 100 IPR015300 -
Mtr3g1580 281 ProSiteProfiles B3 DNA-binding domain profile. 227 281 IPR003340 GO:0003677
Mtr3g1580 281 MobiDBLite consensus disorder prediction 151 166 - -
Mtr3g1580 281 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 5 280 IPR039218 -
Mtr3g1580 281 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1580 Mtr-Chr3 27603563 27604788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1580 9 281 B3 DNA Binding Superfamily AT3G18990 25.893 2.19e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g1580 B3 2.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1580 - - mtr:MTR_3g061330 379.407