Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1579 ATGGCTAGGGAAGATTCTATCCTCCCCATCCTTTTCTTCAAGATCATCCTCCAAACTAATCTTCAAAGGATTCAATTACCAAATAAGTTTACTAGGAAACATGGAGTTGGTCTATCTAATCCAGTGTTGATCAAGCTTCCTGATGGCACTGGATGGAAAGTTTATTGGAAAAAAATCAATGGCGAGATGTGGTTTGAAAAGGGTTGGAAAACTTTTACTGAAAATTACTCTCTTGAACATGGCTGTTTGGTGATGTTTGAATATAAAGGAACTTCCAAGTTTGATGTAGTAATACTTGGCCAGAATGCAGTAGAAATAGATTATGATTCTTCAAGTGACACTAATGATGAAAATGACAATGTTGATCATAGTGATGATGATGAATCAGTTGAGATTTTGGATGAATGGCTTAATCGGAAGAAGGCTAGACAAAGATCACCTTTTATTTCTACTCGACCACATAAGAAAGTTCGAGGAGATCATGAGAAGACTACTAAAAGAACTTCATCAATAAACTGGCCGAAGAATGCTAGAGCTCAGGAAGTAGCTCAAAATTTCATCTCATGCAATCCTTTCTTTACAGTTCTCATAAACCCGAATGATCTGGAAGCAAATCAACTGTCTGTACCAGATTTAAAAGGGGTTATTGAGAACAAGGACACAAATGTGATGCTGCTGATTGGGAAAAGATCATGGAATGTGAAATTACTTCGTTGTTATGAGGGAAAATATAACCGTCGCCTTTCTGCTGGCTGGCACTTGTTTTTAACTGAAAGTGGACTGAAATCAGGAGATGTTTGTGTCTTTGAATTGATAAACAAGAAAGATTTGGTTTTTAAAGTTCATGTTTACTAA 855 0.3649 MAREDSILPILFFKIILQTNLQRIQLPNKFTRKHGVGLSNPVLIKLPDGTGWKVYWKKINGEMWFEKGWKTFTENYSLEHGCLVMFEYKGTSKFDVVILGQNAVEIDYDSSSDTNDENDNVDHSDDDESVEILDEWLNRKKARQRSPFISTRPHKKVRGDHEKTTKRTSSINWPKNARAQEVAQNFISCNPFFTVLINPNDLEANQLSVPDLKGVIENKDTNVMLLIGKRSWNVKLLRCYEGKYNRRLSAGWHLFLTESGLKSGDVCVFELINKKDLVFKVHVY* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1579 284 CDD B3_DNA 11 99 IPR003340 GO:0003677
Mtr3g1579 284 Gene3D - 10 103 IPR015300 -
Mtr3g1579 284 PANTHER B3 DOMAIN-CONTAINING 10 284 - -
Mtr3g1579 284 MobiDBLite consensus disorder prediction 144 170 - -
Mtr3g1579 284 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 284 - -
Mtr3g1579 284 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Mtr3g1579 284 SUPERFAMILY DNA-binding pseudobarrel domain 11 102 IPR015300 -
Mtr3g1579 284 SMART B3_2 12 102 IPR003340 GO:0003677
Mtr3g1579 284 SMART B3_2 192 282 IPR003340 GO:0003677
Mtr3g1579 284 MobiDBLite consensus disorder prediction 153 168 - -
Mtr3g1579 284 ProSiteProfiles B3 DNA-binding domain profile. 192 284 IPR003340 GO:0003677
Mtr3g1579 284 CDD B3_DNA 192 284 IPR003340 GO:0003677
Mtr3g1579 284 Gene3D - 173 284 IPR015300 -
Mtr3g1579 284 SUPERFAMILY DNA-binding pseudobarrel domain 189 284 IPR015300 -
Mtr3g1579 284 Pfam B3 DNA binding domain 192 282 IPR003340 GO:0003677
Mtr3g1579 284 Pfam B3 DNA binding domain 19 97 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1579 Mtr-Chr3 27599465 27600864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1579 8 284 B3 DNA Binding Superfamily AT3G18990 26.765 5.26e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g1579 B3 5.3e-10 CL0405