Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1578 ATGGCTAGAGGAAAAACTACCCTGCCATTTCGTTTCTTCAAGATCATCCTCCAAACAAATCTTCAAAGGATTAAAATACCAAATGAGTTTACAAGGAGACATGGAGTTGGTCTGTCAAATCCAGTGTTGATCAAGCCTCCTGATGGAACTAAATGGAAAGTTTATTGGAAAAAAATCAATGGTGAGATTTGGTTCGAAAAGGGTTGGAAAACTTTTACTGAAAATTACTCTCTTGGACATGGGTTTTTGGTGTTGTTTAATTATGAAGAAGGAACTTCTAAGTTCCTTGTACACATACTTGGCAAGAATGCAGTAGAAATAGACTATGATGAAAATGTTGATCATAGTGATGATGAATCATGTCAAATTTTGGATGAATGGCCAAATCAAAAGACTGGAAGGAGGCCACCATTAGATTCCCCTCGACCACGTAAGAAAGTTAGAGGTGAGATTAAGAAGACTACTGAAAGAACTACATCATTGAATTGGCCTATGGGAGCTAGAGCTCGAGAAGTAGCTGCAAAATTCATCTCAAGCAATCCTTTTTTCACAATTCTCATAAAGCCTAATCATCTGGTAGAAACTCGGCTGTGTGTACCAAATTTAGAAGGGGTTATTGAGAACAAAGAGAAGTATGTGGTTCTGCAGATTGGGAAAAGATCATGGAATGTGAAATTGCTCCGTTATTACGAGGCTAAAAATGGTCGCCACCTATCAGCAGGTTGGTCCTTGTTTGCAAGTGAAAGTGGACTGCAATCGGGAGATGTTTGTGTCTTTGAACTGACAAACAAGCAAGATTTAGTTTTTAAAATTCATGTTTTATAA 825 0.3782 MARGKTTLPFRFFKIILQTNLQRIKIPNEFTRRHGVGLSNPVLIKPPDGTKWKVYWKKINGEIWFEKGWKTFTENYSLGHGFLVLFNYEEGTSKFLVHILGKNAVEIDYDENVDHSDDESCQILDEWPNQKTGRRPPLDSPRPRKKVRGEIKKTTERTTSLNWPMGARAREVAAKFISSNPFFTILIKPNHLVETRLCVPNLEGVIENKEKYVVLQIGKRSWNVKLLRYYEAKNGRHLSAGWSLFASESGLQSGDVCVFELTNKQDLVFKIHVL* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1578 274 Gene3D - 165 274 IPR015300 -
Mtr3g1578 274 SUPERFAMILY DNA-binding pseudobarrel domain 178 273 IPR015300 -
Mtr3g1578 274 CDD B3_DNA 182 274 IPR003340 GO:0003677
Mtr3g1578 274 Gene3D - 7 104 IPR015300 -
Mtr3g1578 274 CDD B3_DNA 10 100 IPR003340 GO:0003677
Mtr3g1578 274 Pfam B3 DNA binding domain 19 101 IPR003340 GO:0003677
Mtr3g1578 274 Pfam B3 DNA binding domain 182 271 IPR003340 GO:0003677
Mtr3g1578 274 SUPERFAMILY DNA-binding pseudobarrel domain 11 103 IPR015300 -
Mtr3g1578 274 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 7 273 IPR039218 -
Mtr3g1578 274 SMART B3_2 182 271 IPR003340 GO:0003677
Mtr3g1578 274 SMART B3_2 12 103 IPR003340 GO:0003677
Mtr3g1578 274 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Mtr3g1578 274 ProSiteProfiles B3 DNA-binding domain profile. 182 274 IPR003340 GO:0003677
Mtr3g1578 274 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 7 273 - -
Mtr3g1578 274 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1578 Mtr-Chr3 27597121 27598426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1578 9 271 B3 DNA Binding Superfamily AT3G18990 27.381 4.69e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g1578 B3 6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1578 - - mtr:MTR_3g061330 352.829