Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1577 ATGGCTAGAAGAAATTCTACTCTCCCCATCCGTTTCTTCAAGATCATCCTCCAAACTAATCTTCATAGGATTCAAATACCAAATAAGTTTACTAGGAGATATGGAGTTCATTTATCAAATCCAGTGTTGATAAAGCCTCCTGATGGCACTAAATGGAAAGTTTATTGGAAAAAAATCAATGGCGAGATTTGGTTTGAAAAGGGTTGGAAATATTTTACTGAAAATTACTCTCTTGGACATGGCTCTTTGGTTGTGTTTGAATATAAAAGAACTTCCAAGTTTGATGTACACATTTTTGGCCGGAATGCAGTAGAAATAGATTATTCTTCATGTGACAGTGATGATGAAAATGACAATGTTGATCATAGTGATGATGATGAATCAGTTGAGATTTTGGACGAATGGCTTAATTGGAAGAAGGCTAAACAAAGATCACCTTTCGTTTCTCCTCGACCACATAAAAAAGTTCGAGGTGATGATGAGAAGACTACTAAAAGAACTTCATCAATAAATTGGCCAAAGGATGTTAGAGCTCAGAAAGTAGCTCAAAATTTCATCTCAAACAATCCTTTTTTCACAATTCTCATAAAACCTAACCATATAGCAGATAGTCAGCTGTTTGTACCTTTAGATTTAAAAGGGATTATTGAGAACAAAGAGAAGAATGTTCTTCTGCAGATTGGGAAAAAATCATGGAATGTGAAATTGCTCCGTTATTCCGAGATTTTAAATGGTCGCCGCCTATCGGCCGGTTGA 756 0.3571 MARRNSTLPIRFFKIILQTNLHRIQIPNKFTRRYGVHLSNPVLIKPPDGTKWKVYWKKINGEIWFEKGWKYFTENYSLGHGSLVVFEYKRTSKFDVHIFGRNAVEIDYSSCDSDDENDNVDHSDDDESVEILDEWLNWKKAKQRSPFVSPRPHKKVRGDDEKTTKRTSSINWPKDVRAQKVAQNFISNNPFFTILIKPNHIADSQLFVPLDLKGIIENKEKNVLLQIGKKSWNVKLLRYSEILNGRRLSAG* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1577 251 SMART B3_2 12 102 IPR003340 GO:0003677
Mtr3g1577 251 CDD B3_DNA 11 99 IPR003340 GO:0003677
Mtr3g1577 251 MobiDBLite consensus disorder prediction 146 168 - -
Mtr3g1577 251 Pfam B3 DNA binding domain 19 101 IPR003340 GO:0003677
Mtr3g1577 251 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Mtr3g1577 251 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 6 250 IPR039218 -
Mtr3g1577 251 MobiDBLite consensus disorder prediction 152 168 - -
Mtr3g1577 251 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 6 250 - -
Mtr3g1577 251 SUPERFAMILY DNA-binding pseudobarrel domain 11 102 IPR015300 -
Mtr3g1577 251 Gene3D - 173 251 IPR015300 -
Mtr3g1577 251 Gene3D - 7 103 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1577 Mtr-Chr3 27593296 27594978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1577 11 136 B3 DNA Binding Superfamily AT1G49475 36.691 3.58e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g1577 B3 6e-13 CL0405