Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1576 ATGGCTAGAGGAAATTCTACCTTCCCCATCCATTTCTTCAAGATCATCCTCCAAACTAATCTTCAAAGGATTAAAATTCCAAATAAGTTTACAAGGAAACATGGAGTTGGTCTATCAAATCCAGTGTTGATCAAGCCTCCAGATGGCACTAAATGGAAAGTTTATTGGAAAAAAATCAATGGAGAGATTTGGTTTGAAAAGGGTTGGAAATATTTTATTGAAAATTACTCTCTTGGACATGGTTGTTTGGTGGTGTTCAAATATAAAGGAGATTCAAAGTTTGATGTACACATACTTGGCCAGAATGCAGTAGAAATAGACTATGATCCTTCATGTGATGGTTATGATGAGAAAAATGATATTGATCATAGTGATGATGAGTCTGTTGAGATTTTGGAAGAATGGCTTAATCAGAAGAATGCTAGACAAAGATCACCTTTCGTTTCTCCTCGACCTCATAAGAAAGTTAGAGGTGAGATTAAGAAAACTGCTAAAAGAACTTCATCATTGGCCAAGAGGAGCTAG 525 0.3581 MARGNSTFPIHFFKIILQTNLQRIKIPNKFTRKHGVGLSNPVLIKPPDGTKWKVYWKKINGEIWFEKGWKYFIENYSLGHGCLVVFKYKGDSKFDVHILGQNAVEIDYDPSCDGYDEKNDIDHSDDESVEILEEWLNQKNARQRSPFVSPRPHKKVRGEIKKTAKRTSSLAKRS* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1576 174 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 7 163 - -
Mtr3g1576 174 CDD B3_DNA 11 99 IPR003340 GO:0003677
Mtr3g1576 174 SUPERFAMILY DNA-binding pseudobarrel domain 10 102 IPR015300 -
Mtr3g1576 174 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Mtr3g1576 174 MobiDBLite consensus disorder prediction 148 174 - -
Mtr3g1576 174 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 7 163 IPR039218 -
Mtr3g1576 174 MobiDBLite consensus disorder prediction 141 174 - -
Mtr3g1576 174 SMART B3_2 12 102 IPR003340 GO:0003677
Mtr3g1576 174 Gene3D - 6 103 IPR015300 -
Mtr3g1576 174 Pfam B3 DNA binding domain 19 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1576 Mtr-Chr3 27589731 27591655 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1576 12 132 B3 DNA Binding Superfamily AT3G18990 32.558 5.60e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g1576 B3 6.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1576 - - mtr:MTR_3g061330 286.189