Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1575 ATGGCTAGGAGAAATGCTACACTTCCCATCCGTTTCTTCAAGATTATTCTCCAAACTAATCTTCAAAGGATTCAAATACCAAATAATTTTACAAGGAGATATGGAGTTGGTCTAACAAATCCAGTGTTGATCAAGGCTCCTGATGGCACTAAATGGAAAGTTTACTGGAAAAAAATCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAAACATTTTACTGAAAATTACTCTCTACAACATGGATGTTTGGTGGTGTTTAAATATAAAGGAACTTCCAAGTTTGATGTACTAATACTTGGTAATAATGCGGTTGAAATAGACTATGATTCTTCATGTGACACTGATGATGAAAATGGAAATGTTGGTCAAAATGACGATGAATCACTTGAGATTTCAGATGAATGGCGAAATCAGAAGATTGCTAGAAAAAGGCCACCATTATTTTATCCTCGACCACATAAGAAATTTAGCGGTGAGAACAAGAAGAGTACTAAAAGAACTTCATCCTTGAATCGGTCAAATAGAGCTAGAGTTGAGGAAGTAGCTGCAAAATTCACCTCAAGCAATCCTTTTTTCACAATTCTCATTCTGCCTAATCATCTGGTAGCAGGTCGGCCGCGCGTACCAAATATACATTTAAAGGGGGTTATTGAGAACAAGGAGAAGAATCTGGTGCTTCAGATTGGAGAAAGATCATGGAAGGTGAAATTGCTTGCTTCTTACGAGCGTGAGACGGGTCGTCGCCTTTCAGCCGGCTGGTCCTTGTTCGTAAATGAGAGTGGACTGCAACCTGAAAATGTTTGTGTCTTTGAACTGATAAACAAGGAAAATTTAGTTTTTAAAGTTCATGTTTTCTAA 858 0.3776 MARRNATLPIRFFKIILQTNLQRIQIPNNFTRRYGVGLTNPVLIKAPDGTKWKVYWKKINGEIWFEKGWKHFTENYSLQHGCLVVFKYKGTSKFDVLILGNNAVEIDYDSSCDTDDENGNVGQNDDESLEISDEWRNQKIARKRPPLFYPRPHKKFSGENKKSTKRTSSLNRSNRARVEEVAAKFTSSNPFFTILILPNHLVAGRPRVPNIHLKGVIENKEKNLVLQIGERSWKVKLLASYERETGRRLSAGWSLFVNESGLQPENVCVFELINKENLVFKVHVF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1575 285 SMART B3_2 12 102 IPR003340 GO:0003677
Mtr3g1575 285 SMART B3_2 191 283 IPR003340 GO:0003677
Mtr3g1575 285 CDD B3_DNA 11 99 IPR003340 GO:0003677
Mtr3g1575 285 SUPERFAMILY DNA-binding pseudobarrel domain 185 285 IPR015300 -
Mtr3g1575 285 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Mtr3g1575 285 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 285 - -
Mtr3g1575 285 Gene3D - 170 285 IPR015300 -
Mtr3g1575 285 ProSiteProfiles B3 DNA-binding domain profile. 191 285 IPR003340 GO:0003677
Mtr3g1575 285 MobiDBLite consensus disorder prediction 146 174 - -
Mtr3g1575 285 SUPERFAMILY DNA-binding pseudobarrel domain 11 102 IPR015300 -
Mtr3g1575 285 Pfam B3 DNA binding domain 19 96 IPR003340 GO:0003677
Mtr3g1575 285 Pfam B3 DNA binding domain 191 284 IPR003340 GO:0003677
Mtr3g1575 285 Gene3D - 7 103 IPR015300 -
Mtr3g1575 285 PANTHER B3 DOMAIN-CONTAINING 9 285 - -
Mtr3g1575 285 CDD B3_DNA 191 285 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1575 Mtr-Chr3 27586464 27588287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1575 8 285 B3 DNA Binding Superfamily AT3G18990 26.036 3.05e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g1575 B3 4.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1575 - - mtr:MTR_3g061330 353.599