Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1574 ATGGCAAGGAGAAATGCTACCTTTCCCATCCATTTTTTCAAGATCATCCTCCAATCTAATCTTCAAAGACTTAAAATACCACATAAGTTTACAAAGAAACATGGAGTTGGTCTATCAAATCCAGTGTTGATCAAGCCTCCAGATGGCACTAAATGGAAAGTTTATTGGAAAAAAATCGATGGTGAGATTTGGTTTGAAAAGGGTTGGAAATATTTTACTGAAAATTACTCTCTTGGACATGGCTCTTTGGTGGTGTTTGAATATAAAGGAACTTCGAAATTTGATGTAGTAATACTTGGTCGGAATGCAGTAGAAATAGACTATGATACTTCATGTGACACTGATGATGAAAATGACAATGTTGGTCATAGTGATGATGAATCAGTTGAGATTTTAGATGAATGGCCAAATCAGAAGAGTACTGGAAAAAGGTCGCCATTATTTTCTCCTCGACCGTATAAGAAAGTAAGAGCTGAGGTTATGAAGACTAGTGAAAGAACTACATCATGGAATTGGCCAAAGGGAGCTAGAGCTCAGGAAGTAGCTTTAAAATTCATCTCAACCAATCCTTTTTTCACAATTCTCATAAACCCTACTCATCTAGCAGAAAATCGGGTGTGTGTACCAACTTTAAATGGGGTTATTGAGAACAAAGAAAAGTATGTGATGCTGCAGATTGGGAAAAGATCATGGAATCTGAAATTGCTCCCTTATTGCGAGGCTAGAAATGTTCGCCGCCTTTCGGCCGGTTGGTCCTTGTTTGCTAGAGAAAGTGGACTGCAAGCAGGAGATGTTTGTGTCTTTGAACTGATAAACAAGAAGGATTTGGTTTTTAATATTCATATTACCAAAAGTGACAGTTAA 864 0.375 MARRNATFPIHFFKIILQSNLQRLKIPHKFTKKHGVGLSNPVLIKPPDGTKWKVYWKKIDGEIWFEKGWKYFTENYSLGHGSLVVFEYKGTSKFDVVILGRNAVEIDYDTSCDTDDENDNVGHSDDESVEILDEWPNQKSTGKRSPLFSPRPYKKVRAEVMKTSERTTSWNWPKGARAQEVALKFISTNPFFTILINPTHLAENRVCVPTLNGVIENKEKYVMLQIGKRSWNLKLLPYCEARNVRRLSAGWSLFARESGLQAGDVCVFELINKKDLVFNIHITKSDS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1574 287 CDD B3_DNA 11 99 IPR003340 GO:0003677
Mtr3g1574 287 Pfam B3 DNA binding domain 191 282 IPR003340 GO:0003677
Mtr3g1574 287 Pfam B3 DNA binding domain 19 100 IPR003340 GO:0003677
Mtr3g1574 287 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Mtr3g1574 287 Gene3D - 174 286 IPR015300 -
Mtr3g1574 287 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 7 284 IPR039218 -
Mtr3g1574 287 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 7 284 - -
Mtr3g1574 287 SUPERFAMILY DNA-binding pseudobarrel domain 10 102 IPR015300 -
Mtr3g1574 287 ProSiteProfiles B3 DNA-binding domain profile. 191 286 IPR003340 GO:0003677
Mtr3g1574 287 SUPERFAMILY DNA-binding pseudobarrel domain 187 285 IPR015300 -
Mtr3g1574 287 Gene3D - 7 103 IPR015300 -
Mtr3g1574 287 SMART B3_2 191 286 IPR003340 GO:0003677
Mtr3g1574 287 SMART B3_2 12 102 IPR003340 GO:0003677
Mtr3g1574 287 CDD B3_DNA 191 284 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1574 Mtr-Chr3 27579392 27582668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1574 12 280 B3 DNA Binding Superfamily AT3G18990 27.108 1.19e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g1574 B3 3.1e-10 CL0405