Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1572 ATGACGGCAACACTCAGCCTCGCCGGTATCTCCGTCGTCAGGCCACTTCGTTTCTCCGACGACTGTTCCACCTCCGCAAGATTCATTGCGAAACCGAGTTCCAATATCTCAAATCGGCGCCGGATTTCAATCCGAGCAGTAACGGCGGCAGTCGAGACACGGCGGCCGGCGACTAGCTTATACGAAGTTTTACGACTGAATCCAGGCGCATCAGCGATGGAGATTAAATCTGCTTACCGGAGTCTTGCGAAGGTTTACCATCCCGATGCGGCGGCGCGGAGGTTACAGGAGTGTAACGACGGTGACTTCATCGAGATCCGCAACGCTTATGAAACTCTCTCTGATCCATCTTCGAGACAGATTTACGATCTGTCGCTAATGGTGCACGGCGGAAGAAACCGGCGGTTTACGGCGGCGCCGGTGATGCAGAAACGGAATTCTGGTTTTTATACGAATCGGAGATGGGAAACGGATCAATGTTGGTAG 486 0.5329 MTATLSLAGISVVRPLRFSDDCSTSARFIAKPSSNISNRRRISIRAVTAAVETRRPATSLYEVLRLNPGASAMEIKSAYRSLAKVYHPDAAARRLQECNDGDFIEIRNAYETLSDPSSRQIYDLSLMVHGGRNRRFTAAPVMQKRNSGFYTNRRWETDQCW* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1572 161 Pfam DnaJ domain 60 123 IPR001623 -
Mtr3g1572 161 ProSiteProfiles dnaJ domain profile. 59 126 IPR001623 -
Mtr3g1572 161 PRINTS DnaJ domain signature 61 79 IPR001623 -
Mtr3g1572 161 PRINTS DnaJ domain signature 79 94 IPR001623 -
Mtr3g1572 161 PRINTS DnaJ domain signature 98 118 IPR001623 -
Mtr3g1572 161 SUPERFAMILY Chaperone J-domain 56 137 IPR036869 -
Mtr3g1572 161 ProSitePatterns Nt-dnaJ domain signature. 103 122 IPR018253 -
Mtr3g1572 161 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 1 161 - -
Mtr3g1572 161 CDD DnaJ 61 115 IPR001623 -
Mtr3g1572 161 SMART dnaj_3 58 118 IPR001623 -
Mtr3g1572 161 Gene3D DnaJ domain 45 144 IPR036869 -
Mtr3g1572 161 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1572 Mtr-Chr3 27534739 27535618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1572 50 123 C2H2 Transcription Factor Family AT1G74250 40.260 4.73e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1572 - - gmx:100798752 162.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1572 3 27534739 27535618 Mtr3g1572 3 27534739 27535618 ECH