Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1550 ATGGTTTCATTTTCATCAAACTATGCAATAGGAGAAAATAGCATGGCTAGTAGTGTTCAAACCATGCCTCAACCAACTACCTTATCTCAAGATCAACCTTCATTTTTGACTAGAATGGCTATGAGAATATCAAGATCAAGATGTTTCAATTTTTTGAGAAGAGTGTTTCATTACCAAAATGGACCAAGATCTGATCTTGGTTCTAACCCTTTTAATTCTAGTACTTGGATGATGTGTGAGTTGATTGCTTTGTTGATTCAGATAACAAGTTCAACATTTACTTTGGCAATTTCAAAGAGTGAGAAACCTGTTTGGCCTATGAGGGTGTGGATAGTTGGTTATGATATTGGATGTGTTCTTAATTTGTTGTTACTTTATGGAAGATATCATCAAATTAATGGGACTAATGGAGATGCTCTTGGCCTTTCTGATTTGGAACAGCAAACAAACAATGAAGAAAACAGTGTATACAGGAGCACACATTTGATGAGCAAATGCAGAAGTTCACTAGAGCTTTTCTTTGCAATATGGTTTGTGATGGGAAATGTTTGGTCTTTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTCCAAGTTCTCTGCATCATTCTTCTTGTTTGGAATGCAATTTGCTACTCTTTCCCTTTTCTACTGTTTTTGTTGCTTTGTTGTGTTGTGCCACTCATTAGCACCCTCCTTGGTTACAACATGAACATTGGCTCCTCTTCTAAAGGTGCATCTGATGATCAAATCTCACAACTTCCATCTTGGAGATTTAAAGTGGCTCATACCAAAGTAGATGTTAACAATGATTCTCAATGCAGTGAAAGATTGATCGCCGATGAGCCGGAATGTTGCATATGCTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTACCTTGTTCCCATATGTTCCATCTAAAATGTGTTGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGTAAACAAGGACTTCAAAGGTAG 1002 0.3703 MVSFSSNYAIGENSMASSVQTMPQPTTLSQDQPSFLTRMAMRISRSRCFNFLRRVFHYQNGPRSDLGSNPFNSSTWMMCELIALLIQITSSTFTLAISKSEKPVWPMRVWIVGYDIGCVLNLLLLYGRYHQINGTNGDALGLSDLEQQTNNEENSVYRSTHLMSKCRSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQVLCIILLVWNAICYSFPFLLFLLLCCVVPLISTLLGYNMNIGSSSKGASDDQISQLPSWRFKVAHTKVDVNNDSQCSERLIADEPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQGLQR* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1550 333 CDD RING-H2_RNF111_like 285 328 - -
Mtr3g1550 333 Pfam RING-like zinc finger 286 314 IPR001841 -
Mtr3g1550 333 SUPERFAMILY RING/U-box 278 331 - -
Mtr3g1550 333 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
Mtr3g1550 333 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 332 - -
Mtr3g1550 333 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 332 - -
Mtr3g1550 333 SMART ring_2 287 327 IPR001841 -
Mtr3g1550 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 332 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1550 Mtr-Chr3 27282242 27285902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1550 35 331 C3H Transcription Factor Family AT4G26580 68.350 6.50e-144 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1550 - - gmx:100818715 537.724