Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1548 ATGGAAATTGGGGTAGAGGATGAGATTGTTGACATGTCAACCTTACCTCCATCAAATGGTTCCATGATGATGGCAAGCAGGAATGCTTACTTTAGGAATAGGTTTTCAGAGATTGATATAGAAGTTGAAGATTCAAATATCAACCAAAATGGCCCCCTCCCCATTTTTCTAAAGTTTGAAGATGTAGAGTATAAGGTGAGAAATAGCCAGTTAGGCTCTGATAACCCTGTGAAGGTAATGGTGACAAAGGTATCCACACGACACGCAGTAGAAGAAGATAGATACACGAGAATTTTGAAGGGGATTACTGGAAGCATTGGCCCTGGTGAAATTCTTGCTCTGATGGGTCCTTCTGGCAGTGGAAAGACAACCTTGTTGAGGGTTATAGGTGGAAGATTGCTTGACAATACAAAAGGAAAAATTACTTACAATGATGTTAAATATACTCCAGCTGTTAAGAGAAGGATTGGTTTTGTGACACAAGAGGATATACTTTTCCCACAATTAACAGTGGAAGAAACATTAGTCTTTTCAGCATTCTTAAGGTTACCAACCAGTATGACCAAGCAAGAAAAATACGCAAAAGTGGAAACAACTGTGAAGGAGCTAGGCCTTGAAAGATGTCGACACACGAAAATAGGTGGAGGATATCTCAAAGGTATATCAGGAGGAGAAAGGAAAAGAACAAGCATAGGCTATGAAATTCTTGTTGATCCTTCATTGCTGTTGCTTGATGAACCAACTTCAGGTCTTGATTCTACAGCAGCAAACAAACTCCTTGTCACACTTCAAGGACTTGCAAAGGCTGGAAGGACCATAATCTCAACAATTCACCAGCCATCAAGCAGAATCTTTCACATGTTTGACAAACTTCTTTTGATATCTGAAGGCTATCCTATTTACTATGGCGCTGCTAGAGAAACAATGGAGTACTTTTCGTCGTTGAGGTTCAATCCCGAAATAGCAATGAATCCAGCGGAGTTCTTGCTTGATTTGGCAACTGGTCAAGTGAATGATATAAGTATTCCAACGGATATTTTTGAAGATCAAGAGCCTACTCATGACCCTTCAAAATCGGTTATTAAGTATCTACAACTCAAGTACAAAACTCTACTGGAGCCAAGAGAAAAAGAGAATCATAGAGGTGTAAGCGCACCAGAAAATCTTCAACTAGCCATTCAGGTGAAGAAAGAGTGGACATTGAGTTGGTTGGACCAATTTGTTATTCTTTCAAAGAGAACATATAGAGCAAGATGCAAGGACTATTTTGACAAGTTAAGACTAATTCAATCACTTGGAGTAGCACTTTTGTTGGGGCTACTTTGGTGGAAATCTTCAACCAACACAGAAGCTCAACTCAGAGATCAGGTTGGTTTAGCATTCTACATCTGTATATTCTGGACATCTTCATGCCTTTTTGGAGCAATCTATGTGTTTCCATTTGAAAAGTACTACTTGATAAAAGAAAGGAAAGCTGACATGTATAGATTAAGTGTATACTATATATGCAGCACTCTATGTGACATGGTGGCACATGTTTGTTATCCAACTTTTTTCTTTATTATTGTCTACTTCATGGCTGGATTTAAGAGGACAGTGGCTTGCTTCTTCCTCACGTTATTTGTTGTTCTACTAATAGCTATAACAAGTCAAGGTGCAGGAGAAATGTTTGGAGCTGCAGTTATGAGTATTAAAAGAGCAGGGATGGCTGCTTCTTTGGTACTAATGTTGTTCCTCCTCACTGGTGGTTATTATGTCCAGCATATACCAAAGTTCATGCAATGGTTGAAGTATCTTTCATTCATGTACTATGGTTTTAGGCTACTTCTAAAAGTGCAATATTCAGGAGACGAATTATATGATTGTGAAAGCAAAGGAGGGTGTAGACCACTACAGAGTTCACCACAATTTGCCACTGTAAACTTGAAAGGTGGCTTAAAAGAAGTTTGGGTTTTGGCAAGCATGGCTATATGCTTCCGATTGTTTGCTTATTTATGGCTCCGTAGAAGAATTGATGTCTGA 2022 0.3902 MEIGVEDEIVDMSTLPPSNGSMMMASRNAYFRNRFSEIDIEVEDSNINQNGPLPIFLKFEDVEYKVRNSQLGSDNPVKVMVTKVSTRHAVEEDRYTRILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLLDNTKGKITYNDVKYTPAVKRRIGFVTQEDILFPQLTVEETLVFSAFLRLPTSMTKQEKYAKVETTVKELGLERCRHTKIGGGYLKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTAANKLLVTLQGLAKAGRTIISTIHQPSSRIFHMFDKLLLISEGYPIYYGAARETMEYFSSLRFNPEIAMNPAEFLLDLATGQVNDISIPTDIFEDQEPTHDPSKSVIKYLQLKYKTLLEPREKENHRGVSAPENLQLAIQVKKEWTLSWLDQFVILSKRTYRARCKDYFDKLRLIQSLGVALLLGLLWWKSSTNTEAQLRDQVGLAFYICIFWTSSCLFGAIYVFPFEKYYLIKERKADMYRLSVYYICSTLCDMVAHVCYPTFFFIIVYFMAGFKRTVACFFLTLFVVLLIAITSQGAGEMFGAAVMSIKRAGMAASLVLMLFLLTGGYYVQHIPKFMQWLKYLSFMYYGFRLLLKVQYSGDELYDCESKGGCRPLQSSPQFATVNLKGGLKEVWVLASMAICFRLFAYLWLRRRIDV* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1548 673 Pfam ABC transporter 99 249 IPR003439 GO:0005524
Mtr3g1548 673 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 313 IPR027417 -
Mtr3g1548 673 SMART AAA_5 108 299 IPR003593 -
Mtr3g1548 673 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 79 321 IPR003439 GO:0005524
Mtr3g1548 673 Pfam ABC-2 type transporter 406 614 IPR013525 GO:0016020|GO:0140359
Mtr3g1548 673 Gene3D - 79 316 IPR027417 -
Mtr3g1548 673 Pfam ABC-2 type transporter 278 338 IPR043926 GO:0140359
Mtr3g1548 673 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 5 670 - -
Mtr3g1548 673 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 5 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1548 Mtr-Chr3 27258256 27263463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1548 97 282 Calmodulin-binding Proteins AT2G36910 30.890 3.20e-12 68.2