Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1544 ATGCGTTGTTACGGCTTAACAATCCCTGGAAGCGATCATCGCTTAATCACACCAACACTACCTCCTTCACTATCCTTCCGACCCACCACCATACCCATGACCCGAATCTCATTCGGGGCATCCTTTCCAAAGCTTAAAGCCACCTTCAACGACGGCATGGCGGCGGAGGAACGGAGCTTCTACGATCTTCTTGGCATACCAGAATCCGGTTCATTGATGGATATCAAAAGAGCCTATAAACAACTTGCAAGAAAGTATCACCCGGATGTTTCACCACCGGATCGGGTCAAAGAGTATACCAAGAGGTTTATTCAGGTTCAGGAGGCGTATGAAACGTTGTCTGATCCTTCAAGGAGGATTATGTATGATAGAGATATGGCTATAGGGATTCATCTTGCTTTCAATGCTTGTAAATGCTATAATCATTCTGATCAGGTGAGTGAACAAAAGGGTGATTGGAAATCTCAACTCGCTGGCCTGCAGAGAAGAAGTGATAGCAAGGTTGCTGCTGAGAATATGTCATGGGCGGCTCGAGTGCGCCAGCAGAGGGGGGAATTGTGA 561 0.4706 MRCYGLTIPGSDHRLITPTLPPSLSFRPTTIPMTRISFGASFPKLKATFNDGMAAEERSFYDLLGIPESGSLMDIKRAYKQLARKYHPDVSPPDRVKEYTKRFIQVQEAYETLSDPSRRIMYDRDMAIGIHLAFNACKCYNHSDQVSEQKGDWKSQLAGLQRRSDSKVAAENMSWAARVRQQRGEL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1544 186 Pfam DnaJ domain 60 123 IPR001623 -
Mtr3g1544 186 PRINTS DnaJ domain signature 61 79 IPR001623 -
Mtr3g1544 186 PRINTS DnaJ domain signature 79 94 IPR001623 -
Mtr3g1544 186 PRINTS DnaJ domain signature 98 118 IPR001623 -
Mtr3g1544 186 SUPERFAMILY Chaperone J-domain 55 129 IPR036869 -
Mtr3g1544 186 ProSiteProfiles dnaJ domain profile. 59 126 IPR001623 -
Mtr3g1544 186 ProSitePatterns Nt-dnaJ domain signature. 103 122 IPR018253 -
Mtr3g1544 186 CDD DnaJ 60 115 IPR001623 -
Mtr3g1544 186 SMART dnaj_3 58 118 IPR001623 -
Mtr3g1544 186 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 26 185 - -
Mtr3g1544 186 Gene3D DnaJ domain 46 152 IPR036869 -
Mtr3g1544 186 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 26 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1544 Mtr-Chr3 27223510 27224692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1544 55 123 C2H2 Transcription Factor Family AT1G74250 37.500 6.47e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1544 - - cam:101492872 271.166