Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1540 ATGCCGGAAACGCTTTATCTCTGTGTCAACATCCTTGACCGCGTACTTTCCAAAATCAATTTTGAAGTCAAGACAATGGAGAAACTTAAACTTATCGGTCTCTCTTCATTGTTGTTGGCTTCCAAGTATGAACAAAGAAGAGCGGTTGGTGTTTACGACGTTGAATACTTGGCTGATTATATTTATATGCCAGAAGAAATATGTCAAATGGAGAAGCTTATCCTGCAAGAACTTGGTTGGATTTTAACAGTTCCAACACCTTATGTTTTTCTTGTTAGAAACATAAGGGCATGTAATTTATCGGATGAAGACAAGATCATGGAGCACATGGTGTTTTTCTTTTCTGAACTCAGCTTAACAAATCATTCTATTGTGTGCGACTACAAGCCTTCTATGATTGCTGCTTGTGCCGTGTATCTTGCAAGGTTTATTGTTGGAAGATTAGGTAGTGTACGTATGCAAGTGCTGGTGGTTCTTTTGTTATCTGAGAAGCTTTGGTTCGGTACGGTTTAG 513 0.3879 MPETLYLCVNILDRVLSKINFEVKTMEKLKLIGLSSLLLASKYEQRRAVGVYDVEYLADYIYMPEEICQMEKLILQELGWILTVPTPYVFLVRNIRACNLSDEDKIMEHMVFFFSELSLTNHSIVCDYKPSMIAACAVYLARFIVGRLGSVRMQVLVVLLLSEKLWFGTV* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1540 170 Pfam Cyclin, C-terminal domain 85 145 IPR004367 -
Mtr3g1540 170 Pfam Cyclin, N-terminal domain 2 82 IPR006671 -
Mtr3g1540 170 PANTHER CYCLIN-B1-4 1 145 - -
Mtr3g1540 170 CDD CYCLIN 83 147 IPR013763 -
Mtr3g1540 170 SUPERFAMILY Cyclin-like 84 150 IPR036915 -
Mtr3g1540 170 CDD CYCLIN 2 75 IPR013763 -
Mtr3g1540 170 Gene3D - 1 77 - -
Mtr3g1540 170 SUPERFAMILY Cyclin-like 2 80 IPR036915 -
Mtr3g1540 170 PANTHER CYCLINS 1 145 IPR039361 -
Mtr3g1540 170 Gene3D - 78 163 - -
Mtr3g1540 170 SMART cyclin_7 89 163 IPR013763 -
Mtr3g1540 170 SMART cyclin_7 2 76 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1540 Mtr-Chr3 27180127 27181832 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1540 2 142 Core Cell Cycle Gene Families AT3G11520 49.650 1.53e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1540 K21777 - sind:105163744 129.413