LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g1528	ATGAAGAGGATTAGGAGGGACACGTCTATGATGCGTCAGAAGAATAGGCAGTTTAAATCCTTGAAGCAAATCCCTGATTTCTCAAAGTGTGATTCAACATTGAGTGCTGGTCGAGATAGCTCTCGCAATCCTACATCTTTACGTAGATGTCAACATTGTGTAGACAACGAAAATAATACTCCTCTTATGCGCCATGGGCCAGCTGGAGAAAAAACATTATGTAATGCATGCGGCATCGTTTGGGCCAAAAAGAGGAAACTTAGAGATCTCAGTAAGGGACGAGTAGATCTTTCTGTTGAGCAAAGTGATCTGGATGCTCTAATTGATGTCAATGTTGTTGAAGGAGAATTGCCTGCCATCCAAAATGAACAAAATCCTCTTGTTGATGTCAATATTACTTATTTTGAAGGAGAATTGTCTGTCATCCAAAATGAACAGGTTATCTCTGATGATCATTCCAAAGCCGTCGCTGGTAAAGGTTCGAATAATACATCAAACCCTTGTGATGAGAATTTGCTGGATCCTCTTATTGATGTCAATATTATTGTTCTTGATGGAGAATTGCCTGTCATCCAAAATGAACAAGGTATTTCTGAAGATCCTTCCAAAACCATCACTCCTAAAGGTTCAAATAATCACACATTAAACCCCTGTGACGAGGATCCTCTTATTGATGTCAATATTACTGTTCATGATGGAAAATTGCCTGTCATCCAAAATGAACAAGTTATTCGTGAAGATCCTTCCAAAGCCATTGTAGGTGAAAGGTCGTATAATCATGGATTACATCTCTGTGACGAGGATCTTCTTATTGATGTCAATATTACTGTTTTTGATGGAAAACTGCCTGTCATCCAAAATGAACATGGTATTTCTGAAGATCCTTCCAAAGCCATCGTTGGTGAAAGAGCATATAATCATGCATTAAACCTCTGTGATGAGGGTATTTCTGAAGATCCTTCCAGAGCCCTCGGTGTTGAAGGTTCAAATAATCATGCTTTAAGCCCCTGTGAGGATGCTCTAATTGATGTCAATGTTGTTGAAGGAGAATTGCCTGCCATCCAAAAGGAACAAGGAATTGCTGAAGATCCTTCCAAAGGCATCATTGTTGAACTTGAAGGTTCAAGTACTCATGCATTAAACCCCTGTGACAAGCCGATGAAGAGCTACACGTTTTCAGAGATCATTGCAACGGCAGAGTCATTGTTGGCATTTCTCGATAAGGACTTGCCATCTGCCTCGGAGGTAGACTACACCTCGAGTCGAGCTAAGTATAGAAGGATTGTGCTCGAGACTACAACCGTTGCAGGGCAGACTGTCCGCAATGACATCACCAGGAGGATGATGGATCTTCCTGTGCCTTTACAACAGATTATAGAGGCATGGTTGGATGTTTTGGCGAGTGGGGTAGAGACACCTTCTGAGGACTCATCTGAGAGACCACTCCGTACTACGTTCTCTGAACCTCCAAGGAGTAGGGAGACATTTGTTCATCCTGCCACTCCTAGAAGTGTTGTAGCTGCTACTGGGGATGAGGTTGGGCCATCCACCTCCAGGGTGGTTCAGGAGGAACCAGTGGGTGAAGAGGTTCCTGTGGTTGTGCCTGAGCCTGTTGTTTCTCCTCAGTTAAATAGCATTCATAGCAGTCACCTGATTCAGTCATAG	1665	0.427	MKRIRRDTSMMRQKNRQFKSLKQIPDFSKCDSTLSAGRDSSRNPTSLRRCQHCVDNENNTPLMRHGPAGEKTLCNACGIVWAKKRKLRDLSKGRVDLSVEQSDLDALIDVNVVEGELPAIQNEQNPLVDVNITYFEGELSVIQNEQVISDDHSKAVAGKGSNNTSNPCDENLLDPLIDVNIIVLDGELPVIQNEQGISEDPSKTITPKGSNNHTLNPCDEDPLIDVNITVHDGKLPVIQNEQVIREDPSKAIVGERSYNHGLHLCDEDLLIDVNITVFDGKLPVIQNEHGISEDPSKAIVGERAYNHALNLCDEGISEDPSRALGVEGSNNHALSPCEDALIDVNVVEGELPAIQKEQGIAEDPSKGIIVELEGSSTHALNPCDKPMKSYTFSEIIATAESLLAFLDKDLPSASEVDYTSSRAKYRRIVLETTTVAGQTVRNDITRRMMDLPVPLQQIIEAWLDVLASGVETPSEDSSERPLRTTFSEPPRSRETFVHPATPRSVVAATGDEVGPSTSRVVQEEPVGEEVPVVVPEPVVSPQLNSIHSSHLIQS*	555

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mtr3g1528	554	CDD	ZnF_GATA	49	96	IPR000679	GO:0006355\|GO:0043565
Mtr3g1528	554	MobiDBLite	consensus disorder prediction	471	496	-	-
Mtr3g1528	554	Pfam	GATA zinc finger	50	86	IPR000679	GO:0006355\|GO:0043565
Mtr3g1528	554	MobiDBLite	consensus disorder prediction	198	217	-	-
Mtr3g1528	554	Gene3D	-	42	99	IPR013088	GO:0006355\|GO:0008270
Mtr3g1528	554	PANTHER	GATA TRANSCRIPTION FACTOR 25	100	554	-	-
Mtr3g1528	554	PANTHER	GATA TRANSCRIPTION FACTOR 25	9	96	-	-
Mtr3g1528	554	PANTHER	GATA TRANSCRIPTION FACTOR 28	9	96	IPR045280	GO:0006355
Mtr3g1528	554	PANTHER	GATA TRANSCRIPTION FACTOR 28	100	554	IPR045280	GO:0006355
Mtr3g1528	554	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	46	92	-	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g1528	Mtr-Chr3	27039555	27049901	Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g1528	4	92	Tify Gene Family	AT1G51600	41.000	2.95e-15	75.1

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Mtr3g1528		GATA	3.4e-12	CL0167

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g1528	-		-	mtr:MTR_3g060200	1012.29

Showing 1 to 1 of 1 entries

Previous1Next