Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1528 ATGAAGAGGATTAGGAGGGACACGTCTATGATGCGTCAGAAGAATAGGCAGTTTAAATCCTTGAAGCAAATCCCTGATTTCTCAAAGTGTGATTCAACATTGAGTGCTGGTCGAGATAGCTCTCGCAATCCTACATCTTTACGTAGATGTCAACATTGTGTAGACAACGAAAATAATACTCCTCTTATGCGCCATGGGCCAGCTGGAGAAAAAACATTATGTAATGCATGCGGCATCGTTTGGGCCAAAAAGAGGAAACTTAGAGATCTCAGTAAGGGACGAGTAGATCTTTCTGTTGAGCAAAGTGATCTGGATGCTCTAATTGATGTCAATGTTGTTGAAGGAGAATTGCCTGCCATCCAAAATGAACAAAATCCTCTTGTTGATGTCAATATTACTTATTTTGAAGGAGAATTGTCTGTCATCCAAAATGAACAGGTTATCTCTGATGATCATTCCAAAGCCGTCGCTGGTAAAGGTTCGAATAATACATCAAACCCTTGTGATGAGAATTTGCTGGATCCTCTTATTGATGTCAATATTATTGTTCTTGATGGAGAATTGCCTGTCATCCAAAATGAACAAGGTATTTCTGAAGATCCTTCCAAAACCATCACTCCTAAAGGTTCAAATAATCACACATTAAACCCCTGTGACGAGGATCCTCTTATTGATGTCAATATTACTGTTCATGATGGAAAATTGCCTGTCATCCAAAATGAACAAGTTATTCGTGAAGATCCTTCCAAAGCCATTGTAGGTGAAAGGTCGTATAATCATGGATTACATCTCTGTGACGAGGATCTTCTTATTGATGTCAATATTACTGTTTTTGATGGAAAACTGCCTGTCATCCAAAATGAACATGGTATTTCTGAAGATCCTTCCAAAGCCATCGTTGGTGAAAGAGCATATAATCATGCATTAAACCTCTGTGATGAGGGTATTTCTGAAGATCCTTCCAGAGCCCTCGGTGTTGAAGGTTCAAATAATCATGCTTTAAGCCCCTGTGAGGATGCTCTAATTGATGTCAATGTTGTTGAAGGAGAATTGCCTGCCATCCAAAAGGAACAAGGAATTGCTGAAGATCCTTCCAAAGGCATCATTGTTGAACTTGAAGGTTCAAGTACTCATGCATTAAACCCCTGTGACAAGCCGATGAAGAGCTACACGTTTTCAGAGATCATTGCAACGGCAGAGTCATTGTTGGCATTTCTCGATAAGGACTTGCCATCTGCCTCGGAGGTAGACTACACCTCGAGTCGAGCTAAGTATAGAAGGATTGTGCTCGAGACTACAACCGTTGCAGGGCAGACTGTCCGCAATGACATCACCAGGAGGATGATGGATCTTCCTGTGCCTTTACAACAGATTATAGAGGCATGGTTGGATGTTTTGGCGAGTGGGGTAGAGACACCTTCTGAGGACTCATCTGAGAGACCACTCCGTACTACGTTCTCTGAACCTCCAAGGAGTAGGGAGACATTTGTTCATCCTGCCACTCCTAGAAGTGTTGTAGCTGCTACTGGGGATGAGGTTGGGCCATCCACCTCCAGGGTGGTTCAGGAGGAACCAGTGGGTGAAGAGGTTCCTGTGGTTGTGCCTGAGCCTGTTGTTTCTCCTCAGTTAAATAGCATTCATAGCAGTCACCTGATTCAGTCATAG 1665 0.427 MKRIRRDTSMMRQKNRQFKSLKQIPDFSKCDSTLSAGRDSSRNPTSLRRCQHCVDNENNTPLMRHGPAGEKTLCNACGIVWAKKRKLRDLSKGRVDLSVEQSDLDALIDVNVVEGELPAIQNEQNPLVDVNITYFEGELSVIQNEQVISDDHSKAVAGKGSNNTSNPCDENLLDPLIDVNIIVLDGELPVIQNEQGISEDPSKTITPKGSNNHTLNPCDEDPLIDVNITVHDGKLPVIQNEQVIREDPSKAIVGERSYNHGLHLCDEDLLIDVNITVFDGKLPVIQNEHGISEDPSKAIVGERAYNHALNLCDEGISEDPSRALGVEGSNNHALSPCEDALIDVNVVEGELPAIQKEQGIAEDPSKGIIVELEGSSTHALNPCDKPMKSYTFSEIIATAESLLAFLDKDLPSASEVDYTSSRAKYRRIVLETTTVAGQTVRNDITRRMMDLPVPLQQIIEAWLDVLASGVETPSEDSSERPLRTTFSEPPRSRETFVHPATPRSVVAATGDEVGPSTSRVVQEEPVGEEVPVVVPEPVVSPQLNSIHSSHLIQS* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1528 554 CDD ZnF_GATA 49 96 IPR000679 GO:0006355|GO:0043565
Mtr3g1528 554 MobiDBLite consensus disorder prediction 471 496 - -
Mtr3g1528 554 Pfam GATA zinc finger 50 86 IPR000679 GO:0006355|GO:0043565
Mtr3g1528 554 MobiDBLite consensus disorder prediction 198 217 - -
Mtr3g1528 554 Gene3D - 42 99 IPR013088 GO:0006355|GO:0008270
Mtr3g1528 554 PANTHER GATA TRANSCRIPTION FACTOR 25 100 554 - -
Mtr3g1528 554 PANTHER GATA TRANSCRIPTION FACTOR 25 9 96 - -
Mtr3g1528 554 PANTHER GATA TRANSCRIPTION FACTOR 28 9 96 IPR045280 GO:0006355
Mtr3g1528 554 PANTHER GATA TRANSCRIPTION FACTOR 28 100 554 IPR045280 GO:0006355
Mtr3g1528 554 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 46 92 - -
Mtr3g1528 554 SMART GATA_3 44 97 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1528 Mtr-Chr3 27039555 27049901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1528 4 92 Tify Gene Family AT1G51600 41.000 2.95e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr3g1528 GATA 3.4e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1528 - - mtr:MTR_3g060200 1012.29